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Update index docs to remove references to 'indexing only mode' #3376

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Update index docs to remove references to 'indexing only mode'

Update index docs to remove references to 'indexing only mode' #3376

Run tests (tests/skip_trimming.nf.test docker NF-latest-everything)

Run tests (tests/skip_trimming.nf.test docker NF-latest-everything)
succeeded May 27, 2025 in 12m 53s