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32 Open 60 Closed
32 Open 60 Closed
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Issues list

ERROR ~ Error executing process > 'NFCORE_FETCHNGS:SRA:SRA_RUNINFO_TO_FTP (1)' bug Something isn't working
#346 opened May 12, 2025 by Luke-ebbis 1.13.0
1
Add support for cloud platform enhancement Improvement for existing functionality
#345 opened May 8, 2025 by Zhenghongc
1
Add xsra support enhancement Improvement for existing functionality
#344 opened May 1, 2025 by edmundmiller
Partition error on SLURM only with fetchngs - bug Something isn't working
#343 opened Apr 9, 2025 by DollyCM 1.13.0
Fetchngs fails with error: terminated with an error exit status (1) -- Execution is retried (1) bug Something isn't working
#342 opened Mar 26, 2025 by kanekalla
1
remove partially failed samples from output enhancement Improvement for existing functionality
#340 opened Mar 19, 2025 by dmalzl
fetchngs test fails
#336 opened Feb 6, 2025 by mjfi2sb3 1.13.0
fasterq-dump => disk: local-ssd enhancement Improvement for existing functionality
#332 opened Jan 11, 2025 by nick-youngblut 1.13.0
3
Incorrect MD5 checksums being used for some files bug Something isn't working
#331 opened Jan 9, 2025 by tanaes 1.13.0
1.11.0 works while 1.12.0 fails for apptainer+wget ( wget: unable to resolve host address 'ftp.sra.ebi.ac.uk' ) bug Something isn't working
#328 opened Dec 9, 2024 by lindenb 1.13.0
2
Incorrect fastq paths in scRNA-seq sample sheet bug Something isn't working
#326 opened Nov 29, 2024 by huldash
Update some modeles for TES compliance bug Something isn't working
#318 opened Sep 13, 2024 by vsmalladi 1.13.0
1
@vsmalladi
SRATOOLS_FASTERQDUMP failing due to missing fastq file bug Something isn't working
#317 opened Jul 24, 2024 by edg1983
11
Support for CNBG enhancement Improvement for existing functionality
#315 opened Jul 1, 2024 by nathaniel-mahieu
DDBJ study ids (DRP123456) do not map correctly bug Something isn't working
#314 opened Jul 1, 2024 by awalsh17
Support for GSA accessions enhancement Improvement for existing functionality
#313 opened May 30, 2024 by millerh1
SRA file links deprecated bug Something isn't working
#301 opened Mar 7, 2024 by tiendu 1.13.0
3
wget host address error bug Something isn't working
#291 opened Feb 23, 2024 by mniederhuber 1.13.0
9
Merge technical replicates (SRR1 + SRR2 -> SRX) enhancement Improvement for existing functionality
#270 opened Feb 6, 2024 by millerh1
Add ability to download more than 2 FastQ files via FTP and Aspera enhancement Improvement for existing functionality
#260 opened Jan 30, 2024 by drpatelh
3
check out extensions for input files bug Something isn't working
#256 opened Jan 25, 2024 by maxulysse 1.13.0
3
Use nf-test for input validation enhancement Improvement for existing functionality
#254 opened Jan 18, 2024 by drpatelh 1.13.0
FEAT: Pass scientific name as input to download the data
#235 opened Nov 2, 2023 by maxulysse
SRAtools download seems to insert paired-end suffix into workdir path bug Something isn't working
#221 opened Oct 16, 2023 by dmalzl 1.13.0
1
6
Add compatibility with sarek samplesheet enhancement Improvement for existing functionality
#196 opened Sep 21, 2023 by FriederikeHanssen 1.13.0
ProTip! Exclude everything labeled bug with -label:bug.