Skip to content

Actions: PavlidisLab/rnaseq-pipeline

Actions

All workflows

Actions

Loading...
Loading

Showing runs from all workflows
44 workflow runs
44 workflow runs

Filter by Event

Filter by Status

Filter by Branch

Filter by Actor

Ignore scripts/clean-unused-shm-objects
Python Package using Conda #161: Commit 31d2ffd pushed by arteymix
June 24, 2025 20:00 39s master
June 24, 2025 20:00 39s
Update MultiQC to 1.29
Python Package using Conda #160: Commit 948df26 pushed by arteymix
June 24, 2025 20:00 37s master
June 24, 2025 20:00 37s
Use input(), not output() for the report location
Python Package using Conda #159: Commit 520efa6 pushed by arteymix
June 24, 2025 19:53 46s master
June 24, 2025 19:53 46s
Use gemma-cli addMetadataFile to copy the MultiQC report
Python Package using Conda #158: Commit 17b6dfa pushed by arteymix
June 24, 2025 19:38 37s master
June 24, 2025 19:38 37s
Update RSEM
Python Package using Conda #157: Commit 7f13e77 pushed by arteymix
June 24, 2025 17:55 43s master
June 24, 2025 17:55 43s
CLarify that ctime is the change time, not the creation time (at leas…
Python Package using Conda #156: Commit af2199b pushed by arteymix
June 24, 2025 17:53 34s master
June 24, 2025 17:53 34s
Use the Nop format for writing the content of a TAR archive
Python Package using Conda #155: Commit 5b680e5 pushed by arteymix
June 24, 2025 17:46 39s master
June 24, 2025 17:46 39s
Do not use temporary_path(), it is not compatible with stale file rew…
Python Package using Conda #154: Commit 0ea2aad pushed by arteymix
June 24, 2025 17:33 38s master
June 24, 2025 17:33 38s
Use conda-incubator/setup-miniconda
Python Package using Conda #153: Commit 6512832 pushed by arteymix
April 28, 2025 22:36 2m 26s feature-cell-ranger
April 28, 2025 22:36 2m 26s
Use conda-incubator/setup-miniconda
Python Package using Conda #152: Commit 34b6366 pushed by arteymix
April 28, 2025 22:35 1s feature-cell-ranger
April 28, 2025 22:35 1s
Use efetch directory with -id instead of esearch
Python Package using Conda #151: Commit 1ffac55 pushed by arteymix
April 28, 2025 20:57 39s feature-cell-ranger
April 28, 2025 20:57 39s
Update systemd units
Python Package using Conda #150: Commit 1a06a1a pushed by arteymix
April 16, 2025 15:01 40s master
April 16, 2025 15:01 40s
Remove data/luigi.fish
Python Package using Conda #149: Commit 00f48ca pushed by arteymix
March 18, 2025 20:20 46s master
March 18, 2025 20:20 46s
Fix completion
Python Package using Conda #148: Commit 2f7ee24 pushed by arteymix
March 18, 2025 20:19 37s master
March 18, 2025 20:19 37s
Enable new behavior for autoload range and remove unused properties
Python Package using Conda #147: Commit a707827 pushed by arteymix
March 18, 2025 19:10 31s master
March 18, 2025 19:10 31s
Further import and format cleanups
Python Package using Conda #146: Commit 781243f pushed by arteymix
March 18, 2025 19:02 42s master
March 18, 2025 19:02 42s
Reformat code and fix missing imports
Python Package using Conda #145: Commit 68e2cab pushed by arteymix
March 18, 2025 18:54 38s master
March 18, 2025 18:54 38s
Only parse the first line of GEMMA_PASSWORD_CMD
Python Package using Conda #144: Commit 18aea8f pushed by arteymix
March 18, 2025 18:47 43s master
March 18, 2025 18:47 43s
Fix bug when setting is_paired
Python Package using Conda #143: Commit 1e1cce2 pushed by arteymix
November 29, 2024 00:18 2m 24s master
November 29, 2024 00:18 2m 24s
Add --force-single-end and --force-paired-reads
Python Package using Conda #142: Commit 0de706c pushed by arteymix
October 28, 2024 22:04 2m 20s master
October 28, 2024 22:04 2m 20s
Pass --rerun to GenerateReportForExperiment in SubmitExperimentReport…
Python Package using Conda #141: Commit 8e71bc4 pushed by arteymix
September 3, 2024 22:30 3m 44s master
September 3, 2024 22:30 3m 44s
Increase max SRA size to 100G
Python Package using Conda #140: Commit 67570e9 pushed by arteymix
September 3, 2024 20:48 3m 29s master
September 3, 2024 20:48 3m 29s
Revert "Add a priority to GenerateReportForExperiment"
Python Package using Conda #139: Commit eeae8be pushed by arteymix
August 30, 2024 22:51 2m 6s master
August 30, 2024 22:51 2m 6s
Add a priority to GenerateReportForExperiment
Python Package using Conda #138: Commit ebde490 pushed by arteymix
August 30, 2024 22:22 2m 16s master
August 30, 2024 22:22 2m 16s
Add perl to the dependencies for RSEM
Python Package using Conda #137: Commit 298d201 pushed by arteymix
August 26, 2024 18:32 2m 34s master
August 26, 2024 18:32 2m 34s