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@PavlidisLab

Pavlidis lab

The Pavlidis Lab at the University of British Columbia

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  1. neuroexpresso neuroexpresso Public

    📊 Gene expression in neuroexpresso database

    R 18 1

  2. Gemma Gemma Public

    Genomics data re-analysis

    Java 23 6

  3. markerGeneProfile markerGeneProfile Public

    Marker gene profile estimation method used in NeuroExpresso manuscript

    R 14 2

Repositories

Showing 10 of 67 repositories
  • GemBrow Public

    The Gemma Browser

    PavlidisLab/GemBrow’s past year of commit activity
    Vue 4 Apache-2.0 1 28 1 Updated Jun 24, 2025
  • Gemma Public

    Genomics data re-analysis

    PavlidisLab/Gemma’s past year of commit activity
    Java 23 Apache-2.0 6 337 30 Updated Jun 24, 2025
  • rnaseq-pipeline Public

    RNA-seq pipeline for raw sequence alignment and transcript/gene quantification.

    PavlidisLab/rnaseq-pipeline’s past year of commit activity
    Shell 24 Unlicense 5 31 1 Updated Jun 24, 2025
  • RSEM Public Forked from deweylab/RSEM

    RSEM with STAR shared memory support (fork from RSEM: accurate quantification of gene and isoform expression from RNA-Seq data)

    PavlidisLab/RSEM’s past year of commit activity
    C++ 1 GPL-3.0 124 0 0 Updated Jun 24, 2025
  • gemma.R Public

    An R wrapper for the Gemma RESTful API

    PavlidisLab/gemma.R’s past year of commit activity
    R 10 Apache-2.0 1 9 0 Updated Jun 23, 2025
  • gemmapy Public
    PavlidisLab/gemmapy’s past year of commit activity
    Python 6 Apache-2.0 1 9 2 Updated Jun 23, 2025
  • sc-annotation-pipeline Public
    PavlidisLab/sc-annotation-pipeline’s past year of commit activity
    Python 0 0 5 0 Updated Jun 16, 2025
  • baseCode Public

    Data structures, math and statistics tools, and utilities that are often needed across projects.

    PavlidisLab/baseCode’s past year of commit activity
    Java 5 Apache-2.0 0 3 2 Updated Jun 6, 2025
  • gsec Public

    Reusable implementation of the Spring Security framework for lab projects

    PavlidisLab/gsec’s past year of commit activity
    Java 0 Apache-2.0 0 3 6 Updated May 15, 2025
  • pavlab-starter-parent Public

    Curated dependencies for the Pavlidis Lab's Java applications

    PavlidisLab/pavlab-starter-parent’s past year of commit activity
    0 Apache-2.0 0 7 1 Updated May 12, 2025
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