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Documentation and tests for LD matrix output dimensions

Status: Open.

#3229 In tskit-dev/tskit;

· apragsdale opened on Jun 19, 2025

Perform check for mutation parent integrity while checking tree integrity

C APIIssue is about the C APIIssue is about the C API

PerformanceThis issue addresses performance, either runtime or memoryThis issue addresses performance, either runtime or memory

Status: Open.

#3218 In tskit-dev/tskit;

· jeromekelleher opened on Jun 13, 2025

add method to transform coordinates by a RateMap

Status: Open.

#3213 In tskit-dev/tskit;

· petrelharp opened on Jun 11, 2025

Detail issue tracker policy in README

Status: Open.

#3208 In tskit-dev/tskit;

· benjeffery opened on Jun 9, 2025

Review skipped tests

Status: Open.

#3192 In tskit-dev/tskit;

· benjeffery opened on Jun 6, 2025

<code>concatenate</code> is buggy with internal samples

bugSomething isn't workingSomething isn't working

Status: Open.

#3182 In tskit-dev/tskit;

· petrelharp opened on May 29, 2025

span-wise union

Status: Open.

#3181 In tskit-dev/tskit;

· petrelharp opened on May 29, 2025

Improve docs for modifying metadata

Status: Open.

#3156 In tskit-dev/tskit;

· benjeffery opened on May 7, 2025

 ·  

Python 1.0

New tskit.jit module

enhancementNew feature or requestNew feature or request

Status: Open.

#3135 In tskit-dev/tskit;

· jeromekelleher opened on Apr 7, 2025

 ·  

Python 1.0

Update dev requirements

bugSomething isn't workingSomething isn't working

Infrastructure and toolsDevelopment infrastructure and toolsDevelopment infrastructure and tools

Status: Open.

#3134 In tskit-dev/tskit;

· agladstein opened on Apr 3, 2025

 ·  

Python 0.6.5

Add citation for <code>extend_haplotypes</code>

Status: Open.

#3133 In tskit-dev/tskit;

· hyanwong opened on Apr 3, 2025

Setuptools license deprecation

Status: Open.

#3113 In tskit-dev/tskit;

· benjeffery opened on Mar 21, 2025

 ·  

Python 0.7