This application searches inside a text sequence for words that resemble those inside a list of similar words.

A React component to sketch / search for network motifs.

Finding Network Motifs Using MCMC Sampling

Example implementation of "Mueen's Algorithm for Similarity Search" (aka MASS) for ESP32

This is a scanner designed to recognise DNA motifs within a long stretch of DNA. It uses two models for discrimination, one model representing the target and the second model representing the background.

Gibby is a Python package designed to find the motif of a transcription factor de novo based on ChIP-seq data.

Automatic Motif Detection wrapper for dotmotif

Scans TF binding sites based on motifs.

Motif Finding using Gibbs Sampler

Motif Finding through Gibbs Sampling

Coding problems from course 1 of the Bioinformatics specialization

R script for finding and scoring motifs in small genomes using position-frequency tables

Bioinformatics- High-throughput data Analysis project

Perl script to find sequences on multi fasta files that match a determined protein motif. The motifs are coded as a regular expression RegEx. Originally designed to search for fungal chitin synthase proteins.

A robust Python-based bioinformatics tool for comprehensive DNA sequence analysis and manipulation.

Intro to Bioinformatics course contents

Workshops, Course Schedule and Teaching Assistant Review from my time as a chosen Undergraduate Teaching Assistant for the University of Pittsburgh course, BIOSC1540 - Computational Genomics taught by Dr. Miler Lee.

Finding motifs in proteins by uniprot accession number