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metatranscriptomic-analysis

Here are 5 public repositories matching this topic...

pnnl / mercat

MerCat: python code for versatile k-mer counting and diversity estimation for database independent property analysis for meta -ome data

python diversity plotly protein dask fastq k-mer-counting k-mer-frequency divideandconquer metagenomic-analysis metatranscriptomic-analysis kmer-frequency-count nucleotides diversity-estimation database-independent-analysis

Updated Nov 30, 2022
Python

raw-lab / mercat2

MerCat2: python code for versatile k-mer counting and diversity estimation for database independent property analysis for metaome data

python diversity plotly protein dask fastq k-mer-counting k-mer-frequency divideandconquer metagenomic-analysis metatranscriptomic-analysis kmer-frequency-count nucleotides diversity-estimation database-independent-analysis multiomics multiomics-data

Updated Mar 18, 2025
HTML

WJT0925 / WJT0925.github.io

Ph.D. student from State Key Laboratory of Marine Environmental Science of XMU

genome-analysis metatranscriptomic-analysis dinoflagellates

Updated Nov 18, 2021

hermidalc / dragonfish

A fast, efficient, and accurate functional and taxonomic meta-omic profiler built on Pufferfish and the ccdBG

metagenomics metagenomic-analysis metatranscriptomic-analysis metatranscriptomics microbiome-analysis taxonomic-classification microbiome-workflow metagenomic-pipeline functional-profiling taxonomic-profiling metatranscriptomic-pipeline

Updated Nov 7, 2024
Python

kholoud-mamdouh / Bioinformatics

Analysing and Visualizing (EDA) and Cluster data Modeling for metagenomics and metatranscriptomics data to different microbial ecosystems

visualization python bioinformatics metagenomic-analysis metatranscriptomic-analysis dataanalysis

Updated Feb 15, 2023
Jupyter Notebook

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