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celltype-annotation

Here are 8 public repositories matching this topic...

scPRINT

cantinilab / scPRINT

single cell foundation model for Gene network inference and more

open-source embeddings rnaseq zero-shot-learning denoising single-cell-rna-seq cell-biology batch-correction gene-regulatory-network celltype-annotation large-language-models llms large-cell-models zero-imputation

Updated May 31, 2025
Jupyter Notebook

FelixTheStudent / cellpypes

Cell type pipes for R

classification-algorithm scrnaseq single-cell-rna-seq celltype-annotation

Updated Jan 27, 2024
R

ELeFHAnt

praneet1988 / ELeFHAnt

Ensemble Learning for Harmonization and Annotation of Single Cells (ELeFHAnt) provides an easy to use R package for users to annotate clusters of single cells, harmonize labels across single cell datasets to generate a unified atlas and infer relationship among celltypes between two datasets. It uses an ensemble of three machine learning classif…

machine-learning scalability classification single-cell annotation-tool harmonization ngs-analysis single-cell-rna-seq cell-biology celltype-annotation

Updated Jul 18, 2022
R

Cellcano

marvinquiet / Cellcano

Supervised cell type identification for scATAC-seq data

bioinformatics single-cell cell-type-classification supervised-classification-methods cell-type-identification celltype-annotation

Updated Aug 23, 2023
Python

ScialdoneLab / CIARA_python

Implementation of entropy of mixing algorithm in python

opensource bioinformatics rna-seq feature-selection rna-seq-analysis bioinformatics-analysis bioinformatics-algorithms bioinformatics-tool celltype-annotation

Updated Oct 19, 2022
Jupyter Notebook

NygenAnalytics / CyteType

Agentic Cell type annotation for Anndata objects

single-cell marker-genes scanpy anndata celltype-annotation celltype-identification llm-agent

Updated May 30, 2025
Python

MohamedOmar2020 / QuPath_scripts

Custom groovy scripts for QuaPath

groovy-script digital-pathology qupath celltype-annotation qupath-script masked-image-modeling

Updated Jan 22, 2024
Groovy

shahrozeabbas / fsctype

Modification of the Original ScType Method for Barcode Annotation using KNN Algorithm

single-cell annotation-tool seurat spatialtranscriptomics celltype-annotation

Updated Apr 14, 2025
R

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