TCGAbiolinks
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Apr 7, 2025 - R
#
bioc
Here are 13 public repositories matching this topic...
Auto-CORPus pipeline developed by a University of Nottingham and Imperial College London collaboration to standardize text and table data extracted from full text publications. See Open Access publication at: https://doi.org/10.3389/fdgth.2022.788124.
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May 27, 2025 - HTML
Get a nicely-chunked local copy of the biomedical literature (to use for other projects)!
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Jun 10, 2024 - Python
R package for the analysis of GC-MS metabolite profiling data. This git repository mirrors the TargetSearch git repository on bioconductor.
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Apr 17, 2025 - R
Tools for browsing the Bioconductor code repository
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Nov 18, 2024 - CSS
Implements relation extraction for biomedical texts using Hard Negative Mining to improve accuracy in identifying complex entity relationships. Includes code for data processing, training, and evaluation with BioC-format datasets.
natural-language-processing bioinformatics deep-learning pytorch bioc relation-extraction hard-negative-mining biomedical-relation-extraction contrastive-learning biomedical-nlp entity-relation-modeling bioinformatics-dataset
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May 25, 2025 - Jupyter Notebook
This repository offers a robust implementation of biomedical relation extraction models, featuring Hard Negative Mining to boost performance. Explore baseline and HNM-enhanced models with complete code, pretrained models, and sample data for your experiments. 🦠📦
bioinformatics deep-learning pytorch bioc relation-extraction hard-negative-mining biomedical-relation-extraction contrastive-learning biomedical-nlp entity-relation-modeling bioinformatics-dataset
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May 28, 2025 - Jupyter Notebook
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