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@single-cell-genetics

single-cell-genetics

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  1. cellsnp-lite cellsnp-lite Public

    Efficient genotyping bi-allelic SNPs on single cells

    C 143 12

  2. vireo vireo Public

    Demultiplexing pooled scRNA-seq data with or without genotype reference

    Python 86 29

  3. cellSNP cellSNP Public

    Pileup biallelic SNPs from single-cell and bulk RNA-seq data

    Python 77 11

  4. cardelino cardelino Public

    Clone identification from single-cell data

    R 62 13

  5. XClone XClone Public

    Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.

    Python 36 5

  6. singlecell_neuroseq_paper singlecell_neuroseq_paper Public template

    Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation

    Jupyter Notebook 21 6

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