MAPQ plugin

This plugin provide wrappers around several programs of MapQ.

stable:

devel: |

Installation

You will need to use 3.0 version of Scipion to be able to run these protocols. To install the plugin, you have two options:

1. Stable version (not avalaible yet)

scipion installp -p scipion-em-mapq

2. Developer's version

   • download repository

   git clone https://github.com/scipion-em/scipion-em-mapq.git
   

   • install

   scipion installp -p path_to_scipion-em-mapq --devel
   

MapQ binaries will be installed automatically with the plugin.

• Default installation path assumed is software/em/chimera-1.16, if you want to change it, set MAPQ_HOME in scipion.conf file pointing to the folder where Chimera with MapQ is installed.

To check the installation, simply run one of the following Scipion tests:

scipion tests mapq.tests.test_protocols_mapq.TestMapQ

A complete list of tests can also be seen by executing scipion test --show --grep mapq

Supported versions

• 1.16

Protocols

• compute q-scores

References

1. Pintilie, G., Zhang, K., Su, Z. et al. Measurement of atom resolvability in cryo-EM maps with Q-scores. Nat Methods 17, 328–334 (2020). https://doi.org/10.1038/s41592-020-0731-1