Repositories list

• cap-validator

  Public
  Python tool for validating H5AD AnnData files before uploading to the Cell Annotation Platform.

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •0•1•0•0•Updated May 30, 2025May 30, 2025

• cap-anndata

  Public
  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •0•6•1•0•Updated May 30, 2025May 30, 2025

• cas-tools

  Public
  Cell Annotation Schema Tools

  Jupyter Notebook

  •0•1•11•0•Updated May 29, 2025May 29, 2025

• cap-gene-filtering

  Public
  Jupyter Notebook

  •0•0•0•0•Updated May 16, 2025May 16, 2025

• cap-pipeline-config

  Public
  Building ontology pipeline configurations for the Cell Annotation Platform

  Python

  •0•3•0•0•Updated May 13, 2025May 13, 2025

• capseuratconverter

  Public
  The dedicated repo for h5ad to Seurat-rds files convertion

  R

  •1•1•1•0•Updated May 7, 2025May 7, 2025

• cell-annotation-schema

  Public
  General, open-standard schema for cell annotations

  Python

  •2•15•20•3•Updated May 6, 2025May 6, 2025

• cap-python-client

  Public
  Python client for CAP GraphQL API

  Python

  •

  MIT License

  •0•0•5•0•Updated Apr 29, 2025Apr 29, 2025

• cap_organ_slim

  Public
  Makefile

  •0•1•0•0•Updated Nov 28, 2024Nov 28, 2024

• cap_ontology

  Public
  An ODK based repo that allows us to finely tailor content for loading into the KB and also to manage content generated for CAP

  Makefile

  •1•2•0•0•Updated Sep 25, 2024Sep 25, 2024

• CAS-LinkML

  Public
  0•1•4•0•Updated May 7, 2024May 7, 2024

• cap-pipeline-dumps

  Public
  Python

  •0•1•0•0•Updated Jan 8, 2024Jan 8, 2024