Repositories list

• MultiAssayExperiment

  Public
  Container class to represent and manage multi-omics genomic experiments

  multiassayexperiment

  Python

  •

  MIT License

  •1•6•0•1•Updated May 26, 2025May 26, 2025

• Biocborn

  Public
  bioc objects + seaborn

  Python

  •

  MIT License

  •0•1•0•1•Updated May 26, 2025May 26, 2025

• mopsy

  Public
  Matrix operations

  numpymatrixscipy

  Python

  •

  MIT License

  •1•0•1•1•Updated May 26, 2025May 26, 2025

• scrnaseq

  Public
  Collection of public single-cell RNA-seq datasets

  Python

  •

  MIT License

  •0•1•0•1•Updated May 26, 2025May 26, 2025

• pyBiocFileCache

  Public
  Python implementation of the BiocFileCache R package

  cache

  Python

  •

  MIT License

  •2•1•0•1•Updated May 26, 2025May 26, 2025

• bioRAT

  Public
  Python

  •

  MIT License

  •0•0•0•1•Updated May 26, 2025May 26, 2025

• rds2py

  Public
  Read RDS files, in Python

  pythonr

  Python

  •

  MIT License

  •4•22•0•1•Updated May 26, 2025May 26, 2025

• TileDBArray

  Public
  TileDB backed delayed arrays for Python

  tiledbdelayedarray

  Python

  •

  MIT License

  •0•0•0•1•Updated May 26, 2025May 26, 2025

• SpatialFeatureExperiment

  Public
  Python

  •

  MIT License

  •0•1•2•1•Updated May 26, 2025May 26, 2025

• SummarizedExperiment

  Public
  Container class for genomic experiments

  summarizedexperiment

  Python

  •

  MIT License

  •2•5•4•1•Updated May 26, 2025May 26, 2025

• SpatialExperiment

  Public
  Container for Spatial Experiments

  spatial-data

  Python

  •

  MIT License

  •0•2•13•2•Updated May 26, 2025May 26, 2025

• SingleCellExperiment

  Public
  Container class for single-cell experiments

  singlecellexperiment

  Python

  •

  MIT License

  •2•7•0•1•Updated May 26, 2025May 26, 2025

• GenomicRanges

  Public
  Container class to represent genomic locations and support genomic analysis

  genomicranges

  Python

  •

  MIT License

  •4•21•6•2•Updated May 26, 2025May 26, 2025

• HDF5Array

  Public
  HDF5 File-backed arrays for Python

  hdf5delayedarray

  Python

  •

  MIT License

  •0•0•0•1•Updated May 26, 2025May 26, 2025

• IRanges

  Public
  IRanges in Python

  interval-arithmeticiranges

  Python

  •

  MIT License

  •0•3•0•1•Updated May 26, 2025May 26, 2025

• BiocSetup

  Public
  Quickly setup new Python packages

  Python

  •

  MIT License

  •0•1•1•1•Updated May 26, 2025May 26, 2025

• BiocFrame

  Public
  Bioconductor-like data frames

  dataframe

  Python

  •

  MIT License

  •3•4•1•1•Updated May 26, 2025May 26, 2025

• DelayedArray

  Public
  DelayedArrays, in Python

  delayedarray

  Python

  •

  MIT License

  •0•0•2•0•Updated May 7, 2025May 7, 2025

• BiocUtils

  Public
  Miscellaneous utilities for BiocPy, mostly to mimic base functionality in R.

  Python

  •

  MIT License

  •0•0•2•1•Updated May 7, 2025May 7, 2025

• .github

  Public
  0•0•0•0•Updated Apr 23, 2025Apr 23, 2025

• compressed-lists

  Public
  Memory-efficient container for list-like objects

  Python

  •

  MIT License

  •0•0•0•0•Updated Apr 17, 2025Apr 17, 2025

• biocpy.github.io

  Public
  documentation and tutorial

  0•0•0•0•Updated Apr 8, 2025Apr 8, 2025

• assorthead

  Public
  Assorted C++ headers, vendored into a Python package.

  Python

  •

  MIT License

  •0•0•0•0•Updated Mar 9, 2025Mar 9, 2025

• scruncher

  Public
  Helper functions for single-cell analysis

  Python

  •

  MIT License

  •0•0•0•0•Updated Feb 19, 2025Feb 19, 2025

• developer_guide

  Public
  0•2•1•0•Updated Jan 28, 2025Jan 28, 2025

• environments

  Public
  Conda configurations for managing BiocPy releases

  Dockerfile

  •0•0•0•0•Updated Jan 24, 2025Jan 24, 2025

• BiocWorkshop2024

  Public
  rpythonbioconductorbiocpy

  Jupyter Notebook

  •1•0•0•0•Updated Jul 24, 2024Jul 24, 2024

• tutorial

  Public
  tutorial for all bioconductor representations in Python

  biocpy

  TeX

  •0•1•0•0•Updated Mar 15, 2024Mar 15, 2024

• generics

  Public archive
  BiocPy generics

  Python

  •

  MIT License

  •0•0•0•2•Updated Nov 20, 2023Nov 20, 2023

• cpptypes

  Public archive
  Automatically generate wrappers for ctypes with C++

  Python

  •

  MIT License

  •0•0•0•0•Updated Sep 8, 2023Sep 8, 2023