Discussions

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  FBA solving got stuck with JSON format model

  lun-ai asked Apr 15, 2025 in Q&A · Unanswered

  

  

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  cobra.manipulation.modify.convert_to_irreversible(model)

  Zhao-Beauty asked Apr 16, 2025 in Q&A · Unanswered

  

  

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  How to import a custom model (iRP911) not listed in BiGG Models into COBRApy?

  chriscui0823 asked Mar 16, 2025 in Q&A · Unanswered

  

  

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  Why does the original Recon3D_301 include hundreds of blocked reactions?

  KrsickaD asked Feb 11, 2025 in Q&A · Unanswered

  

  

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  dFBA

  FH96 started Aug 21, 2024 in General

  

  

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  Gapfilling, lower interger

  brunorbqi started Aug 20, 2024 in General

  

  

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  Trouble Translating Solution-Derived Constraints to Generic Model

  Rohak72 asked Jul 4, 2024 in Q&A · Closed · Answered

  

  

  

  

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  different gene names/symbols for each isolate of same bacterial species after simulating single gene knockout

  Zhaoju-Deng asked Apr 18, 2024 in Q&A · Answered

  

  

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  Model optimization by integrating growth rate data from biolog

  enhancement

  hites77 asked Apr 17, 2024 in Q&A · Unanswered

  

  

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  [BUG] No biomass flux when another objective is added for FBA analysis

  bug

  hites77 asked Mar 22, 2024 in Q&A · Answered

  

  

  

  

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  Question about iCN900 from BiGG

  bug

  amarsh26 started Mar 21, 2024 in General

  

  

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  question about model.optimize()

  amarsh26 started Mar 13, 2024 in General

  

  

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  Working model returns 0 objective value when duplicated

  Kahuna-flipper asked Feb 21, 2024 in Q&A · Unanswered

  

  

  

  

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  Flux magnitude concerns

  kelseyaw asked Feb 12, 2024 in Q&A · Unanswered

  

  

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  what is the objective function in pFBA using forward+backward fluxes?

  shaicoh3n started Feb 8, 2024 in General · Closed

  

  

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  problem setting up an objective function

  shaicoh3n started Jan 28, 2024 in General

  

  

  

  

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  model load error

  brunorbqi started Nov 29, 2023 in General

  

  

  

  

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  Loading and Editing a model

  Rahmaabubakr asked Oct 1, 2023 in Q&A · Unanswered

  

  

  

  

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  What are the mathematical models implemented in cobrapy?

  galenseilis asked Oct 26, 2023 in Q&A · Unanswered

  

  

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  model.metabolites.M_thf_LSQBKTc_RSQBKT.summary()

  Rahmaabubakr asked Oct 1, 2023 in Q&A · Answered

  

  

  

  

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  Getting an Error when i used a metabolite Identifier that contains a number

  Rahmaabubakr asked Sep 24, 2023 in Q&A · Answered

  

  

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  Hello I am new to python and Cobra, i would be grateful if you can provide me with steps to open an XML file from the computer and/or from online database, i tried the commands on Cobra documentation but i can't apply it.

  Rahmaabubakr asked Sep 17, 2023 in Q&A · Answered

  

  

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  MOMA predicts most genes to be essential

  wshao1 asked Sep 15, 2023 in Q&A · Unanswered

  

  

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  The differences between pFBA and normal FBA

  complicatedZ asked Sep 6, 2023 in Q&A · Unanswered

  

  

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  Making a function for a different type of FBA

  joeybentley asked Aug 23, 2023 in Q&A · Answered

  

  

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