Container configs #14
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| name: Container Configs | |
| on: | |
| # FIXME Remove these and only run on release or PRs to main or TEMPLATE updates | |
| push: | |
| branches: [main,dev] | |
| pull_request: | |
| branches: [main,dev] | |
| release: | |
| types: [published] | |
| # TODO workflow_dispatch: | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| env: | |
| FORCE_COLOR: 1 | |
| steps: | |
| - uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4 | |
| with: | |
| token: ${{ secrets.nf_core_bot_auth_token }} | |
| ref: ${{ github.head_ref }} | |
| - uses: nf-core/setup-nextflow@v2 | |
| with: | |
| version: "25.01.0-edge" | |
| - name: Snapshot containers | |
| run: | | |
| mkdir -p conf/containers | |
| for container in docker singularity; do | |
| for arch in amd64 arm64; do | |
| if [ "$arch" = "arm64" ]; then | |
| profile="wave,$container,arm" | |
| else | |
| profile="wave,$container" | |
| fi | |
| nextflow inspect . -profile $profile -format config > conf/containers/containers_${container}_${arch}.config | |
| done | |
| done | |
| - name: Commit & push changes | |
| id: commit-and-push | |
| run: | | |
| git config user.email "[email protected]" | |
| git config user.name "nf-core-bot" | |
| git config push.default upstream | |
| git add conf/containers/. | |
| git status | |
| git commit -m "[automated] Update container configs" | |
| git push | |