set up nf-test

[CaroAMN]

PR checklist

• This comment contains a description of changes (with reason).
• If you've fixed a bug or added code that should be tested, add tests!
• If you've added a new tool - have you followed the pipeline conventions in the contribution docs
• If necessary, also make a PR on the nf-core/lsmquant branch on the nf-core/test-datasets repository.
• Make sure your code lints (nf-core pipelines lint).
• Ensure the test suite passes (nextflow run . -profile test,docker --outdir <OUTDIR>).
• Check for unexpected warnings in debug mode (nextflow run . -profile debug,test,docker --outdir <OUTDIR>).
• Usage Documentation in docs/usage.md is updated.
• Output Documentation in docs/output.md is updated.
• CHANGELOG.md is updated.
• README.md is updated (including new tool citations and authors/contributors).

[mashehu]

sorry, needed to cancel your nf-test run, because I first needed the add the repo to our runsOn setup, otherwise the job would never start. You should be able to restart it now and it will get picked up. 🤞🏻

[CaroAMN]

sorry, needed to cancel your nf-test run, because I first needed the add the repo to our runsOn setup, otherwise the job would never start. You should be able to restart it now and it will get picked up. 🤞🏻

Thanks :) ! I didn't know that, just heard that nf-test will be needed 😅

[mashehu]

hmm, still stuck. Do you maybe have a commit to push to restart the whole CI?

[CaroAMN]

i will find something :)

[mashehu]

yay, it's working! for GPU runners, see https://github.com/nf-core/methylseq/blob/master/.github/workflows/nf-test-gpu.yml