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  1. segmental_duplications_workflow segmental_duplications_workflow Public

    mask common/de novo repeat regions using repeatmasker, repeatmodeler, trf, and ultra

    Jupyter Notebook 1

  2. pangenome_SD pangenome_SD Public

    A repository with code/scripts described in the pangenome SD project

    Python 1 1

  3. METEORE METEORE Public

    Forked from comprna/METEORE

    Automatic DNA methylation detection from nanopore tools and their consensus model

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  4. Brain_methylome_NHP Brain_methylome_NHP Public

    Forked from soojinyilab/Brain_methylome_NHP

    Python

  5. haplotype_methylation_longread_workflow haplotype_methylation_longread_workflow Public

    analyzing haplotype-specific DNA methylation from long-read data

    Python

  6. DupMethAnalyzer DupMethAnalyzer Public

    Analyzes DNA methylation differences between segmental duplication pairs in the genome.

    Python