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Achievement: Pull Shark

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SergeiNikolenko/README.md

Sergei Nikolenko

👋 Hi there! I’m a data scientist with 4 years of experience in ML and drug design. I’m looking for exciting projects in drug development where I can apply my skills and keep learning. I’d be thrilled to join your team!

🌐 Explore my projects | View my resume

🛠 Key Skills & Tech Stack

  • Cheminformatics & Molecular Modeling:
    RDKit, BioPython, ACE, Chemprop, OpenMM
    Molecular Dynamics & Docking: GROMACS, LAMMPS, AutoDock Vina
    Quantum Chemistry: MOPAC, ORCA, VASP

  • Machine Learning & Data Science:
    Frameworks: PyTorch, TensorFlow, scikit-learn, Transformers, Optuna, PyG, DGL
    Libraries: Pandas, NumPy, XGBoost, CatBoost, Dask

  • Programming & Automation:
    Python (primary), C++, Go – expertise in asynchronous programming, multiprocessing, and multithreading
    DevOps & Workflow Orchestration: Docker, Kubernetes, SLURM, Bash, Airflow, Dagster

💬 Professional Development & Community

  • Languages: Upper-Intermediate English, with international collaboration experience.
  • Kaggle Expert: Check my Kaggle profile

📈 GitHub Stats

SergeiNikolenko's GitHub stats

🌐 Get in Touch

I’m always open to discussions and collaborations on projects within medicinal chemistry, drug discovery, and data science.

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  1. LPCE LPCE Public

    The LPCE project is designed to purify and process PDB structures to extract and filter ligands and remove unwanted components such as water molecules and junk ligands.

    Jupyter Notebook 1

  2. fukui_index_prediction fukui_index_prediction Public

    This project develops a machine learning model using Chebyshev graph convolutions within a Kernel-based Attention Network (KAN) to accurately predict Fukui indices, which are essential for assessin…

    Jupyter Notebook 1

  3. phen_prior phen_prior Public

    Automated pipeline that cleans clinical text, extracts HPO terms, runs ClinPrior, and re-orders an OpenCRAVAT SQLite variant file so the most phenotype-relevant variants appear first. Includes a he…

    Python

  4. ABCFold ABCFold Public

    Forked from rigdenlab/ABCFold

    Scripts to run AlphaFold3, Boltz-1 and Chai-1 with MMseqs2 MSAs and custom templates.

    HTML