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@Gibbons-Lab

Gibbons Lab

The Gibbons Lab -- Microbes + Ecology + Medicine @ the Institute for Systems Biology.
README.md

Gibbons Lab

Our lab is located at the Institute for Systems Biology in Seattle, Washigton. We are interested in the ecology, evolution, and emergent function of host-microbial systems. The team is led by Dr. Sean Gibbons. Our toolset includes ecological and evolutionary theory, applied math and biostatistics, and computational systems biology. Most of our work is within the computational domain, but we occaisionally run our own experiments. Our fundamental aim is to discover and formalize the biological rule sets governing host-microbe systems, and apply these rules to engineer microbial ecoystems to improve human and environmental health.

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  1. wiki wiki Public

    General good-to-know stuff.

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  2. manuals-and-policies manuals-and-policies Public

    2 2

  3. pipelines pipelines Public

    Pipelines used in the lab.

    Nextflow 12 3

  4. mbtools mbtools Public

    R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.

    R 23 9

  5. isb_course_2022 isb_course_2022 Public

    Materials and presentation for the 2022 ISB Microbiome course.

    Jupyter Notebook 27 13

  6. american-gut-app american-gut-app Public

    Source repository for the American Gut App.

    Python 1 1

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