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CahanLab

Algorithms for engineering the fate and function of stem cells

13 followers
United States of America
https://cahanlab.org
@cahanlab

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singleCellNet singleCellNet Public

SingleCellNet: classify single cells across species and platforms

R 137 29
PySingleCellNet PySingleCellNet Public

singleCellNet in Python

Jupyter Notebook 15 11
PACNet PACNet Public

Platform-agnostic CellNet

JavaScript 3 1
epoch epoch Public

gene regulatory network reconstruction from scRNA-Seq

R 24 12

Repositories

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Showing 10 of 20 repositories

EG-CLR Public
Enhancer-Gene Inference via CLR

CahanLab/EG-CLR’s past year of commit activity

Jupyter Notebook 0 0 0 0 Updated Jun 3, 2025
DFMO_EwingSarcoma Public
Code for the transcriptomic analysis described in the paper "Polyamine Depletion Inhibits Ewing Sarcoma Metastasis by Inducing Ferroptosis"

CahanLab/DFMO_EwingSarcoma’s past year of commit activity

R 0 0 0 0 Updated May 8, 2025
PySingleCellNet Public
singleCellNet in Python

CahanLab/PySingleCellNet’s past year of commit activity

Jupyter Notebook 15 MIT 11 1 1 Updated Apr 22, 2025
DKK1_OS Public

CahanLab/DKK1_OS’s past year of commit activity

Python 1 1 0 0 Updated Nov 25, 2024
onesc_paper Public
Analysis steps associated with oneSC paper

CahanLab/onesc_paper’s past year of commit activity

Jupyter Notebook 1 MIT 0 0 0 Updated Nov 20, 2024
oneSC Public
infer transcription factors circuits, simulate single cell expression trajectories

CahanLab/oneSC’s past year of commit activity

Python 4 2 0 0 Updated Nov 7, 2024
stemfinder_paper Public
scripts for reproducible analysis of the results presented in the stemfinder paper

CahanLab/stemfinder_paper’s past year of commit activity

R 0 MIT 0 0 0 Updated Sep 21, 2024
stemfinder Public
estimate cell fate potency from single cell RNA-seq data

CahanLab/stemfinder’s past year of commit activity

R 2 0 1 0 Updated Sep 21, 2024
fruitfly_organogenesis Public
Code for analysis of the fruitfly organogenesis paper.

CahanLab/fruitfly_organogenesis’s past year of commit activity

R 0 0 0 0 Updated Jul 17, 2024
BMSC_23 Public

CahanLab/BMSC_23’s past year of commit activity

Python 0 0 0 0 Updated May 29, 2024

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