Merge pull request #179 from CURENT/develop #151
Workflow file for this run
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| name: Publish | |
| on: | |
| push: | |
| tags: | |
| - '*' | |
| jobs: | |
| func: | |
| name: Functional Tests | |
| runs-on: ubuntu-latest | |
| if: ${{ github.ref != 'refs/heads/misc' }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| python-version: 3.11 | |
| mamba-version: "*" | |
| miniforge-version: "latest" | |
| channels: conda-forge,defaults | |
| channel-priority: true | |
| activate-environment: anaconda-client-env | |
| - shell: bash -el {0} | |
| name: Install dependencies | |
| run: | | |
| mamba install -y nbmake pytest-xdist line_profiler # add'l packages for notebook tests. | |
| mamba install --file requirements.txt --file requirements-dev.txt | |
| python -m pip install -r requirements-nlp.txt | |
| python -m pip install -e . | |
| - shell: bash -el {0} | |
| name: Try installing optional packages | |
| run: | | |
| # Try installing one of the optional packages | |
| pip install PySCIPOpt || pip install xpress || pip install gurobipy || pip install cplex || echo "All optional packages failed to install. Skipping." | |
| - shell: bash -el {0} | |
| name: Run pip check | |
| run: | | |
| if ! pip check; then | |
| echo "pip check failed, but the job will continue." | |
| fi | |
| - shell: bash -el {0} | |
| name: Lint with flake8 | |
| if: github.event_name == 'pull_request' | |
| run: | | |
| flake8 . | |
| - shell: bash -el {0} | |
| name: Test with pytest | |
| run: | | |
| pytest | |
| - shell: bash -el {0} | |
| name: Test notebooks. | |
| run: | | |
| pytest --nbmake examples --ignore=examples/verification | |
| build: | |
| name: Build distribution | |
| needs: | |
| - func | |
| runs-on: ubuntu-latest | |
| if: github.event_name == 'push' && startsWith(github.ref, 'refs/tags/') | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| persist-credentials: false | |
| - name: Set up Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: "3.x" | |
| - name: Install pypa/build | |
| run: >- | |
| python3 -m | |
| pip install | |
| build | |
| --user | |
| - name: Build a binary wheel and a source tarball | |
| run: python3 -m build | |
| - name: Store the distribution packages | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: python-package-distributions | |
| path: dist/ | |
| publish-to-testpypi: | |
| name: TestPyPI | |
| needs: | |
| - build | |
| runs-on: ubuntu-latest | |
| environment: | |
| name: testpypi | |
| url: https://test.pypi.org/p/ltbams | |
| permissions: | |
| id-token: write # IMPORTANT: mandatory for trusted publishing | |
| steps: | |
| - name: Download all the dists | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: python-package-distributions | |
| path: dist/ | |
| - name: Publish TestPyPI | |
| uses: pypa/gh-action-pypi-publish@release/v1 | |
| with: | |
| repository-url: https://test.pypi.org/legacy/ | |
| publish-to-pypi: | |
| name: >- | |
| PyPI | |
| if: startsWith(github.ref, 'refs/tags/') # only publish to PyPI on tag pushes | |
| needs: | |
| - build | |
| runs-on: ubuntu-latest | |
| environment: | |
| name: pypi | |
| url: https://pypi.org/p/ltbams | |
| permissions: | |
| id-token: write # IMPORTANT: mandatory for trusted publishing | |
| steps: | |
| - name: Download all the dists | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: python-package-distributions | |
| path: dist/ | |
| - name: Publish to PyPI | |
| uses: pypa/gh-action-pypi-publish@release/v1 | |
| github-release: | |
| name: >- | |
| Sign and upload to GitHub Release | |
| needs: | |
| - publish-to-pypi | |
| runs-on: ubuntu-latest | |
| permissions: | |
| contents: write # IMPORTANT: mandatory for making GitHub Releases | |
| id-token: write # IMPORTANT: mandatory for sigstore | |
| steps: | |
| - name: Download all the dists | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: python-package-distributions | |
| path: dist/ | |
| - name: Sign the dists with Sigstore | |
| uses: sigstore/[email protected] | |
| with: | |
| inputs: >- | |
| ./dist/*.tar.gz | |
| ./dist/*.whl | |
| - name: Create GitHub Release | |
| env: | |
| GITHUB_TOKEN: ${{ github.token }} | |
| run: >- | |
| gh release create | |
| "$GITHUB_REF_NAME" | |
| --repo "$GITHUB_REPOSITORY" | |
| --notes "" | |
| - name: Upload artifact signatures to GitHub Release | |
| env: | |
| GITHUB_TOKEN: ${{ github.token }} | |
| # Upload to GitHub Release using the `gh` CLI. | |
| # `dist/` contains the built packages, and the | |
| # sigstore-produced signatures and certificates. | |
| run: >- | |
| gh release upload | |
| "$GITHUB_REF_NAME" dist/** | |
| --repo "$GITHUB_REPOSITORY" |