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@AlmaasLab

AlmaasLab

Network Systems Biology

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  1. BiGMeC BiGMeC Public

    BiGMeC - Biosynthetic Gene cluster Metabolic pathway Constructor

    Jupyter Notebook 15 3

  2. AutoKEGGRec AutoKEGGRec Public

    AutoKEGGRec is an automated tool that creates first draft metabolic network reconstructions of single organisms, community reconstructions based on a list of organisms, and finally a consolidated r…

    MATLAB 8 2

  3. csdR csdR Public

    Efficient CSD implementation in R

    R 7 1

  4. micInt micInt Public

    R package for analyzing microbial co-occurences

    R 1

  5. BayesianGEM BayesianGEM Public

    Forked from SysBioChalmers/BayesianGEM

    This repository contains code and data needed to replicate the analysis carried out in the manuscript Pettersen J and Almaas A. 2023.

    Jupyter Notebook 1

  6. T66-GEM T66-GEM Public

    GEM for Aurantiochytrium sp. T66

    Python 1

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