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actions: Attempt fix.
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.github/workflows/test.yml

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@@ -9,17 +9,17 @@ jobs:
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run:
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shell: bash -l {0}
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strategy:
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matrix:
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os: ["ubuntu-latest"]
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matrix:
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os: ["ubuntu-latest"]
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steps:
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- uses: actions/checkout@v2
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- uses: actions/checkout@v4
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- uses: conda-incubator/setup-miniconda@v2
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with:
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activate-environment: test
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environment-file: kingfisher.yml
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python-version: 3.9
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auto-activate-base: false
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mamba-version: "*"
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use-mamba: false
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channels: conda-forge,defaults,bioconda,masonite
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- run: |
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conda info
@@ -28,7 +28,7 @@ jobs:
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env:
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NCBI_API_KEY: ${{ secrets.NCBI_API_KEY }}
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run: |
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# ascp does not work in bare conda env, so don't run those tests. AWS cp also fails here (because it has not been setup, I think).
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echo key is $NCBI_API_KEY && \
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rm test/test_ena.py && \
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pytest -v --timeout=600 -m 'not aws_cp'
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# ascp does not work in bare conda env, so don't run those tests. AWS cp also fails here (because it has not been setup, I think).
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echo key is $NCBI_API_KEY && \
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rm test/test_ena.py && \
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pytest -v --timeout=600 -m 'not aws_cp'

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