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Dask 2024.8.1 and later is very slow

performance

upstreamUsed when our build breaks due to upstream changesUsed when our build breaks due to upstream changes

Status: Open.

#1267 In sgkit-dev/sgkit;

· tomwhite opened on Oct 7, 2024

Install dask[dataframe] explicitly to fix upstream error

upstreamUsed when our build breaks due to upstream changesUsed when our build breaks due to upstream changes

Status: Draft (not ready).

sgkit-dev/sgkitnumber 1261

#1261 In sgkit-dev/sgkit;

· tomwhite opened on Sep 19, 2024

Upstream failure: SystemError: initialization of _internal failed without raising an exception

upstreamUsed when our build breaks due to upstream changesUsed when our build breaks due to upstream changes

Status: Open.

#979 In sgkit-dev/sgkit;

· tomwhite opened on Dec 19, 2022

Dataset cannot be opened when underlying <code>zarr</code> arrays have <code>fill_value</code> set.

upstreamUsed when our build breaks due to upstream changesUsed when our build breaks due to upstream changes

Status: Open.

#960 In sgkit-dev/sgkit;

· benjeffery opened on Nov 21, 2022

Unpin cbgen on Windows Python 3.8 once upstream is fixed

upstreamUsed when our build breaks due to upstream changesUsed when our build breaks due to upstream changes

Status: Open.

#879 In sgkit-dev/sgkit;

· tomwhite opened on Aug 2, 2022

Xarray serialization warning when saving dataset

bugSomething isn't workingSomething isn't working

upstreamUsed when our build breaks due to upstream changesUsed when our build breaks due to upstream changes

Status: Open.

#853 In sgkit-dev/sgkit;

· tomwhite opened on May 6, 2022

Concat VCF's in a sample-wise manner

upstreamUsed when our build breaks due to upstream changesUsed when our build breaks due to upstream changes

Status: Open.

#840 In sgkit-dev/sgkit;

· AlksIDo opened on Apr 12, 2022

Follow up on guvectorize use of fastmath

upstreamUsed when our build breaks due to upstream changesUsed when our build breaks due to upstream changes

Status: Open.

#685 In sgkit-dev/sgkit;

· hammer opened on Sep 22, 2021

Track upstream improvements to concat and rechunk issue

IOIssues related to reading and writing common third-party file formatsIssues related to reading and writing common third-party file formats

upstreamUsed when our build breaks due to upstream changesUsed when our build breaks due to upstream changes

Status: Open.

#366 In sgkit-dev/sgkit;

· tomwhite opened on Nov 2, 2020