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README.md

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by Oshma Chakoory, Sophie Marre, and Pierre Peyret.
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![GitHub All Releases](https://img.shields.io/github/downloads/lewdev/hw-gen/total)
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RiboTaxa is a complete pipeline to rapidly filter and reconstruct the full length SSU rRNA gene from Illumina (meta)genomic dataset and perform taxonomic classification on the reconstructed sequences.
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RiboTaxa takes as input singled-end or paired-end files which can be in compressed format (fastq.gz) or uncompressed format (.fastq).

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