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    196 repositories

    • SADSr-CoVs

      Public
      Code to perform species distribution modeling for Latinne et al. "Diversity and spillover risk of Swine Acute Diarrhea Syndrome and related coronaviruses in China and Southeast Asia"
      R
      •1•0•0•0•Updated May 28, 2025May 28, 2025

    • relic

      Public
      Tools for working with version-controlled data science workflows
      R
      •
      Other
      •2•16•13•1•Updated May 2, 2025May 2, 2025

    • acdc-db-handbook

      Public
      Africa CDC Database Handbook
      R
      •2•1•7•0•Updated Mar 25, 2025Mar 25, 2025

    • eha-ma-handbook

      Public
      EcoHealth Alliance Modeling & Analytics Handbook
      eha-modeling-analyticseha-training
      HTML
      •14•4•46•0•Updated Mar 20, 2025Mar 20, 2025

    • ecohealthalliance.r-universe.dev

      Public
      An R-Universe for EcoHealth Alliance Packages
      MIT License
      •0•1•0•0•Updated Mar 1, 2025Mar 1, 2025

    • acdc-next-steps

      Public
      Africa CDC One Health Database Next Steps
      R
      •1•2•0•0•Updated Nov 26, 2024Nov 26, 2024

    • ehallm

      Public
      What the Package Does (Title Case)
      R
      •1•1•1•0•Updated Nov 7, 2024Nov 7, 2024

    • github-archive

      Public
      organizational archive for github
      R
      •
      MIT License
      •0•1•0•0•Updated Sep 18, 2024Sep 18, 2024

    • serology_methods_sims

      Public
      R
      •0•0•0•0•Updated Sep 12, 2024Sep 12, 2024

    • rig-slides

      Public
      R
      •0•0•0•0•Updated Sep 4, 2024Sep 4, 2024

    • awesome-parasite

      Public
      A curated list of host-parasite information
      awesomeawesome-listeha-modeling-analytics
      Other
      •4•47•10•0•Updated Aug 17, 2024Aug 17, 2024

    • hotspots2

      Public
      This code powers the models for the paper "Global hotspots and correlates of emerging zoonotic diseases".
      R
      •
      Apache License 2.0
      •3•5•0•0•Updated Jun 28, 2024Jun 28, 2024

    • sabrenetfunctions

      Public
      Package for some functions for sabrenet data download, cleaning, summarizing, etc used across sabrenet repositories
      R
      •
      Other
      •0•0•0•0•Updated Jun 17, 2024Jun 17, 2024

    • slurm-containerized-hpc-environment

      Public
      The goal of this project is to outline the strategies for integrating Simple Linux Utility for Resource Management(SLURM) into our existing High-Performance Computing(HPC) platform.
      Shell
      •0•0•2•0•Updated May 29, 2024May 29, 2024

    • slurm-eh-server

      Public
      Shell
      •0•0•0•0•Updated Apr 16, 2024Apr 16, 2024

    • pubcrawler

      Public
      PubCrawler uses the EpiTator framework (known at time of writing as Annie) to resolve toponyms in the PubMed Central Open Access Subset. It was used to create the estimate of reporting bias in the paper "Global hotspots and correlates of emerging zoonotic diseases".
      Jupyter Notebook
      •
      Apache License 2.0
      •3•5•0•2•Updated Apr 8, 2024Apr 8, 2024

    • eidr

      Public
      CoffeeScript
      •
      Apache License 2.0
      •0•1•13•1•Updated Apr 8, 2024Apr 8, 2024

    • containerTemplateUtils

      Public
      A set of utility functions for working with the container-template-repo template
      awsrgithub-actions
      R
      •
      Other
      •3•2•12•0•Updated Mar 29, 2024Mar 29, 2024

    • mclustAddonsEHA

      Public
      A customized fork of mclustAddons
      R
      •1•0•0•0•Updated Feb 21, 2024Feb 21, 2024

    • eh-server-workflow-run

      Public
      Outlines how you can run various analytic workflows on EHA infrastructure
      R
      •
      MIT License
      •0•1•8•0•Updated Feb 13, 2024Feb 13, 2024

    • building-blocks-of-reproducibility

      Public
      A series of presentations on creating reproducible workflows
      reproducible-researchreproducible-sciencereproducibility
      HTML
      •5•0•8•0•Updated Feb 12, 2024Feb 12, 2024

    • targets-mermaid-test

      Public
      Test for Target Version and Mermaid Rendering Issues
      HTML
      •0•1•0•0•Updated Feb 7, 2024Feb 7, 2024

    • RPostgres

      Public
      Temporary fork for testing Dolt/Doltgres compatibility
      R
      •
      Other
      •81•0•0•0•Updated Jan 3, 2024Jan 3, 2024

    • ehaproj-template

      Public
      HTML
      •
      Other
      •2•1•0•0•Updated Dec 25, 2023Dec 25, 2023

    • WABNet-spatial

      Public
      Code used to produce figures in final report for WABNet project
      R
      •1•1•0•0•Updated Dec 19, 2023Dec 19, 2023

    • gheri_eucom

      Public
      Repo for FY'19 GHERI EUCOM project mapping ecological factors that my play a role in EID emergence and spread
      R
      •1•0•0•0•Updated Dec 17, 2023Dec 17, 2023

    • git2r

      Public
      R bindings to the libgit2 library
      R
      •
      GNU General Public License v2.0
      •62•1•0•0•Updated Nov 29, 2023Nov 29, 2023

    • mclustEHA

      Public
      A Customized Fork of mclust
      R
      •18•0•0•0•Updated Nov 17, 2023Nov 17, 2023

    • module-system-llama

      Public
      Setting access for user to run llama.cpp models for their work as a module system
      0•0•0•0•Updated Oct 25, 2023Oct 25, 2023

    • amr-analysis

      Public
      Global patterns and correlates in the emergence of antimicrobial resistance in humans
      R
      •
      Other
      •1•4•0•0•Updated Oct 5, 2023Oct 5, 2023