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    13 repositories

    • IsoDesign

      Public
      IsoDesign is a scientific tool to design 13C-fluxomics experiments.
      systems-biologymass-spectrometrybiotechnologynuclear-magnetic-resonancefluxomicsmetabolic-flux-analysis13c-mfaisotope-labeling-experiments13c-fluxomics
      Python
      •
      GNU General Public License v3.0
      •2•1•0•0•Updated May 21, 2025May 21, 2025

    • RTMet

      Public
      RTMet is a data workflow to process FIA-MS data coming from a bioreactor, find metabolites and fluxes, and send a feedback command to the system.
      real-timemetabolomicsmass-spectrometrycylcmetabolomics-pipelinefie-hrmsfie-ms
      Shell
      •
      GNU General Public License v3.0
      •0•2•7•0•Updated May 19, 2025May 19, 2025

    • tools_w4m

      Public
      Repository containing the xml wrappers for tools developped by the MetaboHUB-MetaToul-FluxoMet team
      R
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Apr 30, 2025Apr 30, 2025

    • influx

      Public
      Scientific software for flux and metabolite estimation from isotopically labeled data
      HTML
      •2•0•0•0•Updated Feb 14, 2025Feb 14, 2025

    • GraphstatsR

      Public
      A shiny app allowing users to generate advanced interactive graphics and statistical tests. This repo is a mirror of https://forgemia.inra.fr/etienne.rifa/graphstats/
      R
      •
      GNU General Public License v3.0
      •2•0•0•0•Updated Jan 15, 2025Jan 15, 2025

    • OmniQuant

      Public
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Nov 6, 2024Nov 6, 2024

    • PhysioFit

      Public
      Estimation of extracellular fluxes and growth rate
      Python
      •
      GNU General Public License v3.0
      •5•0•0•0•Updated May 29, 2024May 29, 2024

    • Skyline2IsoCor

      Public
      Preparing skyline output data for use in IsoCor software
      Python
      •
      GNU General Public License v3.0
      •0•0•1•0•Updated Mar 29, 2024Mar 29, 2024

    • MSReader

      Public
      Package for parsing a Tracefinder file containing processed Mass Spectrometry data
      Python
      •
      GNU General Public License v3.0
      •2•0•0•0•Updated Apr 3, 2023Apr 3, 2023

    • PhysioFit_Data_Manager

      Public
      Python
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Oct 25, 2022Oct 25, 2022

    • NmrQuant

      Public
      Metabolite concentration quantification from 1D Proton NMR integration areas
      Python
      •
      GNU General Public License v3.0
      •2•0•0•0•Updated Jun 23, 2022Jun 23, 2022

    • PascalTriangle

      Public
      Python software to compute biases between experimental and theoretical values of isotopologue distributions during production of biological standards using controlled labeling patterns
      Python
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Apr 7, 2022Apr 7, 2022

    • Isoplot

      Public
      Generate figures from IsoCor output (Mass spectrometry labelling experiments)
      Python
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Dec 7, 2021Dec 7, 2021