From b89be0185d92ebde26f54189a15bd9ffc27f6065 Mon Sep 17 00:00:00 2001 From: Jonathan Manning Date: Fri, 20 Dec 2024 17:24:11 +0000 Subject: [PATCH 1/3] Bump versions after release --- CHANGELOG.md | 6 ++++++ nextflow.config | 2 +- tests/default.nf.test.snap | 4 ++-- tests/featurecounts_group_type.nf.test.snap | 4 ++-- tests/hisat2.nf.test.snap | 4 ++-- tests/kallisto.nf.test.snap | 4 ++-- tests/min_mapped_reads.nf.test.snap | 4 ++-- tests/remove_ribo_rna.nf.test.snap | 4 ++-- tests/salmon.nf.test.snap | 4 ++-- tests/skip_qc.nf.test.snap | 4 ++-- tests/skip_trimming.nf.test.snap | 2 +- tests/star_rsem.nf.test.snap | 4 ++-- tests/umi.nf.test.snap | 6 +++--- workflows/rnaseq/assets/multiqc/multiqc_config.yml | 4 ++-- 14 files changed, 31 insertions(+), 25 deletions(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index 5019c34f2..f6bb2dc22 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -3,6 +3,12 @@ The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/) and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html). +# 3.19.0dev - xxxx-xx-xx + +### Credits + +### Enhancements & fixes + # 3.18.0 - 2024-12-19 ### Credits diff --git a/nextflow.config b/nextflow.config index aacf937c3..61400efa7 100644 --- a/nextflow.config +++ b/nextflow.config @@ -333,7 +333,7 @@ manifest { description = """RNA sequencing analysis pipeline for gene/isoform quantification and extensive quality control.""" mainScript = 'main.nf' nextflowVersion = '!>=24.04.2' - version = '3.18.0' + version = '3.19.0dev' doi = 'https://doi.org/10.5281/zenodo.1400710' } diff --git a/tests/default.nf.test.snap b/tests/default.nf.test.snap index 8fdef2729..9b1a3267f 100644 --- a/tests/default.nf.test.snap +++ b/tests/default.nf.test.snap @@ -46,7 +46,7 @@ "untar": 1.34 }, "Workflow": { - "nf-core/rnaseq": "v3.18.0" + "nf-core/rnaseq": "v3.19.0dev" } }, [ @@ -240,7 +240,7 @@ "untar": 1.34 }, "Workflow": { - "nf-core/rnaseq": "v3.18.0" + "nf-core/rnaseq": "v3.19.0dev" } }, [ diff --git a/tests/featurecounts_group_type.nf.test.snap b/tests/featurecounts_group_type.nf.test.snap index 96f7b3778..cb5148262 100644 --- a/tests/featurecounts_group_type.nf.test.snap +++ b/tests/featurecounts_group_type.nf.test.snap @@ -46,7 +46,7 @@ "untar": 1.34 }, "Workflow": { - "nf-core/rnaseq": "v3.18.0" + "nf-core/rnaseq": "v3.19.0dev" } }, [ @@ -234,7 +234,7 @@ "untar": 1.34 }, "Workflow": { - "nf-core/rnaseq": "v3.18.0" + "nf-core/rnaseq": "v3.19.0dev" } }, [ diff --git a/tests/hisat2.nf.test.snap b/tests/hisat2.nf.test.snap index e765de22a..36b62e586 100644 --- a/tests/hisat2.nf.test.snap +++ b/tests/hisat2.nf.test.snap @@ -47,7 +47,7 @@ "untar": 1.34 }, "Workflow": { - "nf-core/rnaseq": "v3.18.0" + "nf-core/rnaseq": "v3.19.0dev" } }, [ @@ -237,7 +237,7 @@ "untar": 1.34 }, "Workflow": { - "nf-core/rnaseq": "v3.18.0" + "nf-core/rnaseq": "v3.19.0dev" } }, [ diff --git a/tests/kallisto.nf.test.snap b/tests/kallisto.nf.test.snap index 192ddaedc..273c590cb 100644 --- a/tests/kallisto.nf.test.snap +++ b/tests/kallisto.nf.test.snap @@ -59,7 +59,7 @@ "untar": 1.34 }, "Workflow": { - "nf-core/rnaseq": "v3.18.0" + "nf-core/rnaseq": "v3.19.0dev" } }, [ @@ -319,7 +319,7 @@ "untar": 1.34 }, "Workflow": { - "nf-core/rnaseq": "v3.18.0" + "nf-core/rnaseq": "v3.19.0dev" } }, [ diff --git a/tests/min_mapped_reads.nf.test.snap b/tests/min_mapped_reads.nf.test.snap index 7c0412a2e..187c5b3cf 100644 --- a/tests/min_mapped_reads.nf.test.snap +++ b/tests/min_mapped_reads.nf.test.snap @@ -137,7 +137,7 @@ "untar": 1.34 }, "Workflow": { - "nf-core/rnaseq": "v3.18.0" + "nf-core/rnaseq": "v3.19.0dev" } }, [ @@ -1246,7 +1246,7 @@ "untar": 1.34 }, "Workflow": { - "nf-core/rnaseq": "v3.18.0" + "nf-core/rnaseq": "v3.19.0dev" } }, [ diff --git a/tests/remove_ribo_rna.nf.test.snap b/tests/remove_ribo_rna.nf.test.snap index 6abd45320..607d8beb6 100644 --- a/tests/remove_ribo_rna.nf.test.snap +++ b/tests/remove_ribo_rna.nf.test.snap @@ -143,7 +143,7 @@ "untar": 1.34 }, "Workflow": { - "nf-core/rnaseq": "v3.18.0" + "nf-core/rnaseq": "v3.19.0dev" } }, [ @@ -1460,7 +1460,7 @@ "untar": 1.34 }, "Workflow": { - "nf-core/rnaseq": "v3.18.0" + "nf-core/rnaseq": "v3.19.0dev" } }, [ diff --git a/tests/salmon.nf.test.snap b/tests/salmon.nf.test.snap index 87a9a3e14..28eeb3c90 100644 --- a/tests/salmon.nf.test.snap +++ b/tests/salmon.nf.test.snap @@ -53,7 +53,7 @@ "untar": 1.34 }, "Workflow": { - "nf-core/rnaseq": "v3.18.0" + "nf-core/rnaseq": "v3.19.0dev" } }, [ @@ -392,7 +392,7 @@ "untar": 1.34 }, "Workflow": { - "nf-core/rnaseq": "v3.18.0" + "nf-core/rnaseq": "v3.19.0dev" } }, [ diff --git a/tests/skip_qc.nf.test.snap b/tests/skip_qc.nf.test.snap index 0c6fd0e1c..7e2bebed1 100644 --- a/tests/skip_qc.nf.test.snap +++ b/tests/skip_qc.nf.test.snap @@ -43,7 +43,7 @@ "untar": 1.34 }, "Workflow": { - "nf-core/rnaseq": "v3.18.0" + "nf-core/rnaseq": "v3.19.0dev" } }, [ @@ -182,7 +182,7 @@ "untar": 1.34 }, "Workflow": { - "nf-core/rnaseq": "v3.18.0" + "nf-core/rnaseq": "v3.19.0dev" } }, [ diff --git a/tests/skip_trimming.nf.test.snap b/tests/skip_trimming.nf.test.snap index 7a9edbf1b..78f2d0096 100644 --- a/tests/skip_trimming.nf.test.snap +++ b/tests/skip_trimming.nf.test.snap @@ -133,7 +133,7 @@ "untar": 1.34 }, "Workflow": { - "nf-core/rnaseq": "v3.18.0" + "nf-core/rnaseq": "v3.19.0dev" } }, [ diff --git a/tests/star_rsem.nf.test.snap b/tests/star_rsem.nf.test.snap index ab6ed8d6c..14cd39ce2 100644 --- a/tests/star_rsem.nf.test.snap +++ b/tests/star_rsem.nf.test.snap @@ -137,7 +137,7 @@ "untar": 1.34 }, "Workflow": { - "nf-core/rnaseq": "v3.18.0" + "nf-core/rnaseq": "v3.19.0dev" } }, [ @@ -1339,7 +1339,7 @@ "untar": 1.34 }, "Workflow": { - "nf-core/rnaseq": "v3.18.0" + "nf-core/rnaseq": "v3.19.0dev" } }, [ diff --git a/tests/umi.nf.test.snap b/tests/umi.nf.test.snap index 1d0df4de3..b5c8a7579 100644 --- a/tests/umi.nf.test.snap +++ b/tests/umi.nf.test.snap @@ -140,7 +140,7 @@ "untar": 1.34 }, "Workflow": { - "nf-core/rnaseq": "v3.18.0" + "nf-core/rnaseq": "v3.19.0dev" } }, [ @@ -1644,7 +1644,7 @@ "untar": 1.34 }, "Workflow": { - "nf-core/rnaseq": "v3.18.0" + "nf-core/rnaseq": "v3.19.0dev" } }, [ @@ -2797,7 +2797,7 @@ "untar": 1.34 }, "Workflow": { - "nf-core/rnaseq": "v3.18.0" + "nf-core/rnaseq": "v3.19.0dev" } }, [ diff --git a/workflows/rnaseq/assets/multiqc/multiqc_config.yml b/workflows/rnaseq/assets/multiqc/multiqc_config.yml index 4af07dc67..a12abac36 100644 --- a/workflows/rnaseq/assets/multiqc/multiqc_config.yml +++ b/workflows/rnaseq/assets/multiqc/multiqc_config.yml @@ -1,7 +1,7 @@ report_comment: > - This report has been generated by the nf-core/rnaseq analysis pipeline. For information about how - to interpret these results, please see the documentation. report_section_order: # Important checks and failures From f192297f860dd73ced145a5942c040469ebdd5bb Mon Sep 17 00:00:00 2001 From: Jonathan Manning Date: Fri, 20 Dec 2024 17:26:42 +0000 Subject: [PATCH 2/3] Update changelog --- CHANGELOG.md | 2 ++ 1 file changed, 2 insertions(+) diff --git a/CHANGELOG.md b/CHANGELOG.md index f6bb2dc22..e93721c61 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -9,6 +9,8 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0 ### Enhancements & fixes +- [PR #1480](https://github.com/nf-core/rnaseq/pull/1480) - Bump versions after release 3.18.0 + # 3.18.0 - 2024-12-19 ### Credits From e71589896734cae895c9d97d8d4268754902071f Mon Sep 17 00:00:00 2001 From: Jonathan Manning Date: Fri, 20 Dec 2024 17:29:56 +0000 Subject: [PATCH 3/3] Bump ci --- CHANGELOG.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index e93721c61..26dc4b709 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -9,7 +9,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0 ### Enhancements & fixes -- [PR #1480](https://github.com/nf-core/rnaseq/pull/1480) - Bump versions after release 3.18.0 +- [PR #1480](https://github.com/nf-core/rnaseq/pull/1480) - Bump version after release 3.18.0 # 3.18.0 - 2024-12-19