diff --git a/CHANGELOG.md b/CHANGELOG.md
index 5019c34f2..26dc4b709 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -3,6 +3,14 @@
The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/)
and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
+# 3.19.0dev - xxxx-xx-xx
+
+### Credits
+
+### Enhancements & fixes
+
+- [PR #1480](https://github.com/nf-core/rnaseq/pull/1480) - Bump version after release 3.18.0
+
# 3.18.0 - 2024-12-19
### Credits
diff --git a/nextflow.config b/nextflow.config
index aacf937c3..61400efa7 100644
--- a/nextflow.config
+++ b/nextflow.config
@@ -333,7 +333,7 @@ manifest {
description = """RNA sequencing analysis pipeline for gene/isoform quantification and extensive quality control."""
mainScript = 'main.nf'
nextflowVersion = '!>=24.04.2'
- version = '3.18.0'
+ version = '3.19.0dev'
doi = 'https://doi.org/10.5281/zenodo.1400710'
}
diff --git a/tests/default.nf.test.snap b/tests/default.nf.test.snap
index 8fdef2729..9b1a3267f 100644
--- a/tests/default.nf.test.snap
+++ b/tests/default.nf.test.snap
@@ -46,7 +46,7 @@
"untar": 1.34
},
"Workflow": {
- "nf-core/rnaseq": "v3.18.0"
+ "nf-core/rnaseq": "v3.19.0dev"
}
},
[
@@ -240,7 +240,7 @@
"untar": 1.34
},
"Workflow": {
- "nf-core/rnaseq": "v3.18.0"
+ "nf-core/rnaseq": "v3.19.0dev"
}
},
[
diff --git a/tests/featurecounts_group_type.nf.test.snap b/tests/featurecounts_group_type.nf.test.snap
index 96f7b3778..cb5148262 100644
--- a/tests/featurecounts_group_type.nf.test.snap
+++ b/tests/featurecounts_group_type.nf.test.snap
@@ -46,7 +46,7 @@
"untar": 1.34
},
"Workflow": {
- "nf-core/rnaseq": "v3.18.0"
+ "nf-core/rnaseq": "v3.19.0dev"
}
},
[
@@ -234,7 +234,7 @@
"untar": 1.34
},
"Workflow": {
- "nf-core/rnaseq": "v3.18.0"
+ "nf-core/rnaseq": "v3.19.0dev"
}
},
[
diff --git a/tests/hisat2.nf.test.snap b/tests/hisat2.nf.test.snap
index e765de22a..36b62e586 100644
--- a/tests/hisat2.nf.test.snap
+++ b/tests/hisat2.nf.test.snap
@@ -47,7 +47,7 @@
"untar": 1.34
},
"Workflow": {
- "nf-core/rnaseq": "v3.18.0"
+ "nf-core/rnaseq": "v3.19.0dev"
}
},
[
@@ -237,7 +237,7 @@
"untar": 1.34
},
"Workflow": {
- "nf-core/rnaseq": "v3.18.0"
+ "nf-core/rnaseq": "v3.19.0dev"
}
},
[
diff --git a/tests/kallisto.nf.test.snap b/tests/kallisto.nf.test.snap
index 192ddaedc..273c590cb 100644
--- a/tests/kallisto.nf.test.snap
+++ b/tests/kallisto.nf.test.snap
@@ -59,7 +59,7 @@
"untar": 1.34
},
"Workflow": {
- "nf-core/rnaseq": "v3.18.0"
+ "nf-core/rnaseq": "v3.19.0dev"
}
},
[
@@ -319,7 +319,7 @@
"untar": 1.34
},
"Workflow": {
- "nf-core/rnaseq": "v3.18.0"
+ "nf-core/rnaseq": "v3.19.0dev"
}
},
[
diff --git a/tests/min_mapped_reads.nf.test.snap b/tests/min_mapped_reads.nf.test.snap
index 7c0412a2e..187c5b3cf 100644
--- a/tests/min_mapped_reads.nf.test.snap
+++ b/tests/min_mapped_reads.nf.test.snap
@@ -137,7 +137,7 @@
"untar": 1.34
},
"Workflow": {
- "nf-core/rnaseq": "v3.18.0"
+ "nf-core/rnaseq": "v3.19.0dev"
}
},
[
@@ -1246,7 +1246,7 @@
"untar": 1.34
},
"Workflow": {
- "nf-core/rnaseq": "v3.18.0"
+ "nf-core/rnaseq": "v3.19.0dev"
}
},
[
diff --git a/tests/remove_ribo_rna.nf.test.snap b/tests/remove_ribo_rna.nf.test.snap
index 6abd45320..607d8beb6 100644
--- a/tests/remove_ribo_rna.nf.test.snap
+++ b/tests/remove_ribo_rna.nf.test.snap
@@ -143,7 +143,7 @@
"untar": 1.34
},
"Workflow": {
- "nf-core/rnaseq": "v3.18.0"
+ "nf-core/rnaseq": "v3.19.0dev"
}
},
[
@@ -1460,7 +1460,7 @@
"untar": 1.34
},
"Workflow": {
- "nf-core/rnaseq": "v3.18.0"
+ "nf-core/rnaseq": "v3.19.0dev"
}
},
[
diff --git a/tests/salmon.nf.test.snap b/tests/salmon.nf.test.snap
index 87a9a3e14..28eeb3c90 100644
--- a/tests/salmon.nf.test.snap
+++ b/tests/salmon.nf.test.snap
@@ -53,7 +53,7 @@
"untar": 1.34
},
"Workflow": {
- "nf-core/rnaseq": "v3.18.0"
+ "nf-core/rnaseq": "v3.19.0dev"
}
},
[
@@ -392,7 +392,7 @@
"untar": 1.34
},
"Workflow": {
- "nf-core/rnaseq": "v3.18.0"
+ "nf-core/rnaseq": "v3.19.0dev"
}
},
[
diff --git a/tests/skip_qc.nf.test.snap b/tests/skip_qc.nf.test.snap
index 0c6fd0e1c..7e2bebed1 100644
--- a/tests/skip_qc.nf.test.snap
+++ b/tests/skip_qc.nf.test.snap
@@ -43,7 +43,7 @@
"untar": 1.34
},
"Workflow": {
- "nf-core/rnaseq": "v3.18.0"
+ "nf-core/rnaseq": "v3.19.0dev"
}
},
[
@@ -182,7 +182,7 @@
"untar": 1.34
},
"Workflow": {
- "nf-core/rnaseq": "v3.18.0"
+ "nf-core/rnaseq": "v3.19.0dev"
}
},
[
diff --git a/tests/skip_trimming.nf.test.snap b/tests/skip_trimming.nf.test.snap
index 7a9edbf1b..78f2d0096 100644
--- a/tests/skip_trimming.nf.test.snap
+++ b/tests/skip_trimming.nf.test.snap
@@ -133,7 +133,7 @@
"untar": 1.34
},
"Workflow": {
- "nf-core/rnaseq": "v3.18.0"
+ "nf-core/rnaseq": "v3.19.0dev"
}
},
[
diff --git a/tests/star_rsem.nf.test.snap b/tests/star_rsem.nf.test.snap
index ab6ed8d6c..14cd39ce2 100644
--- a/tests/star_rsem.nf.test.snap
+++ b/tests/star_rsem.nf.test.snap
@@ -137,7 +137,7 @@
"untar": 1.34
},
"Workflow": {
- "nf-core/rnaseq": "v3.18.0"
+ "nf-core/rnaseq": "v3.19.0dev"
}
},
[
@@ -1339,7 +1339,7 @@
"untar": 1.34
},
"Workflow": {
- "nf-core/rnaseq": "v3.18.0"
+ "nf-core/rnaseq": "v3.19.0dev"
}
},
[
diff --git a/tests/umi.nf.test.snap b/tests/umi.nf.test.snap
index 1d0df4de3..b5c8a7579 100644
--- a/tests/umi.nf.test.snap
+++ b/tests/umi.nf.test.snap
@@ -140,7 +140,7 @@
"untar": 1.34
},
"Workflow": {
- "nf-core/rnaseq": "v3.18.0"
+ "nf-core/rnaseq": "v3.19.0dev"
}
},
[
@@ -1644,7 +1644,7 @@
"untar": 1.34
},
"Workflow": {
- "nf-core/rnaseq": "v3.18.0"
+ "nf-core/rnaseq": "v3.19.0dev"
}
},
[
@@ -2797,7 +2797,7 @@
"untar": 1.34
},
"Workflow": {
- "nf-core/rnaseq": "v3.18.0"
+ "nf-core/rnaseq": "v3.19.0dev"
}
},
[
diff --git a/workflows/rnaseq/assets/multiqc/multiqc_config.yml b/workflows/rnaseq/assets/multiqc/multiqc_config.yml
index 4af07dc67..a12abac36 100644
--- a/workflows/rnaseq/assets/multiqc/multiqc_config.yml
+++ b/workflows/rnaseq/assets/multiqc/multiqc_config.yml
@@ -1,7 +1,7 @@
report_comment: >
- This report has been generated by the nf-core/rnaseq analysis pipeline. For information about how
- to interpret these results, please see the documentation.
report_section_order:
# Important checks and failures