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misantamariamisantamaria
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-3762
lines changed

‎.gitattributes

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*.ipynb merge=nbdev-merge

‎.pre-commit-config.yaml

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repos:
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- repo: https://github.com/fastai/nbdev
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rev: 2.2.10
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hooks:
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- id: nbdev_export
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- id: nbdev_clean
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files: ^nbs/.*\.ipynb|^nbs_pipeline/.*\.ipynb$
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- repo: local
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hooks:
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- id: clean-jupyter-files
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name: Clean jupyter notebooks
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entry: ./clean-jupyter-files.sh
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language: script
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files: ^nbs/.*\.ipynb|^nbs_pipeline/.*\.ipynb$
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always_run: true

‎clean-jupyter-files.sh

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#!/bin/sh
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echo "Files received:"
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printf '%s\n' "$@"
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for notebook in "$@"; do
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#--- Clean outputs
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#/usr/local/share/miniconda3/envs/env/bin/nbdev_clean --clear_all --fname "$notebook"
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#--- Do not clean outputs
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echo "--> Clean $notebook "
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/usr/local/share/miniconda3/envs/env/bin/nbdev_clean --fname "$notebook"
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if [ $? -ne 0 ]; then
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echo "Error cleaning $notebook"
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fi
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echo "Clean $notebook -->"
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done
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exit 0

‎dvats/_modidx.py

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'git_url': 'https://github.com/vrodriguezf/deepvats',
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'lib_path': 'dvats'},
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'syms': { 'dvats.all': {},
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'dvats.config': { 'dvats.config.build_enc_artifact': ('config.html#build_enc_artifact', 'dvats/config.py'),
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'dvats.config.check_project_and_entity': ('config.html#check_project_and_entity', 'dvats/config.py'),
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'dvats.config.custom_error': ('config.html#custom_error', 'dvats/config.py'),
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'dvats.config.diff_attrdict': ('config.html#diff_attrdict', 'dvats/config.py'),
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'dvats.config.force_artifact_config_dcae': ('config.html#force_artifact_config_dcae', 'dvats/config.py'),
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'dvats.config.force_artifact_config_mvp': ('config.html#force_artifact_config_mvp', 'dvats/config.py'),
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'dvats.config.force_artifact_config_sd2a': ('config.html#force_artifact_config_sd2a', 'dvats/config.py'),
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'dvats.config.frequency_factor_config': ('config.html#frequency_factor_config', 'dvats/config.py'),
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'dvats.config.get_artifact_config_DCAE': ('config.html#get_artifact_config_dcae', 'dvats/config.py'),
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'dvats.config.get_artifact_config_MVP': ('config.html#get_artifact_config_mvp', 'dvats/config.py'),
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'dvats.config.get_artifact_config_MVP_SWV': ('config.html#get_artifact_config_mvp_swv', 'dvats/config.py'),
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'dvats.config.get_artifact_config_MVP_auxiliar_variables': ( 'config.html#get_artifact_config_mvp_auxiliar_variables',
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'dvats/config.py'),
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'dvats.config.get_artifact_config_MVP_auxiliar_variables_SWV': ( 'config.html#get_artifact_config_mvp_auxiliar_variables_swv',
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'dvats/config.py'),
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'dvats.config.get_artifact_config_MVP_check_errors': ( 'config.html#get_artifact_config_mvp_check_errors',
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'dvats/config.py'),
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'dvats.config.get_artifact_config_dimensionality_reduction': ( 'config.html#get_artifact_config_dimensionality_reduction',
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'dvats/config.py'),
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'dvats.config.get_artifact_config_embeddings': ( 'config.html#get_artifact_config_embeddings',
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'dvats/config.py'),
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'dvats.config.get_artifact_config_embeddings_SWV': ( 'config.html#get_artifact_config_embeddings_swv',
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'dvats/config.py'),
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'dvats.config.get_artifact_config_sd2a': ('config.html#get_artifact_config_sd2a', 'dvats/config.py'),
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'dvats.config.get_artifact_config_sd2a_check_errors': ( 'config.html#get_artifact_config_sd2a_check_errors',
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'dvats/config.py'),
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'dvats.config.get_artifact_config_sd2a_get_auxiliar_variables': ( 'config.html#get_artifact_config_sd2a_get_auxiliar_variables',
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'dvats/config.py'),
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'dvats.config.get_artifact_config_xai_shap': ('config.html#get_artifact_config_xai_shap', 'dvats/config.py'),
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'dvats.config.get_config': ('config.html#get_config', 'dvats/config.py'),
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'dvats.config.get_project_data': ('config.html#get_project_data', 'dvats/config.py'),
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'dvats.config.get_resampling_frequency': ('config.html#get_resampling_frequency', 'dvats/config.py'),
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'dvats.config.get_tested_config': ('config.html#get_tested_config', 'dvats/config.py'),
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'dvats.config.get_train_artifact': ('config.html#get_train_artifact', 'dvats/config.py'),
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'dvats.config.join_constructor': ('config.html#join_constructor', 'dvats/config.py'),
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'dvats.config.print_colored': ('config.html#print_colored', 'dvats/config.py'),
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'dvats.config.recursive_attrdict': ('config.html#recursive_attrdict', 'dvats/config.py'),
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'dvats.config.replace_includes_with_content': ( 'config.html#replace_includes_with_content',
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'dvats/config.py'),
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'dvats.config.show_attrdict': ('config.html#show_attrdict', 'dvats/config.py'),
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'dvats.config.show_available_configs': ('config.html#show_available_configs', 'dvats/config.py'),
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'dvats.config.show_config': ('config.html#show_config', 'dvats/config.py'),
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'dvats.config.split_artifact_string': ('config.html#split_artifact_string', 'dvats/config.py')},
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'dvats.dr': { 'dvats.dr.check_compatibility': ('dr.html#check_compatibility', 'dvats/dr.py'),
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'dvats.dr.cluster_score': ('dr.html#cluster_score', 'dvats/dr.py'),
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'dvats.dr.color_for_percentage': ('dr.html#color_for_percentage', 'dvats/dr.py'),
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'dvats.dr.create_bar': ('dr.html#create_bar', 'dvats/dr.py'),
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'dvats.dr.get_PCA_prjs': ('dr.html#get_pca_prjs', 'dvats/dr.py'),
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'dvats.dr.get_TSNE_prjs': ('dr.html#get_tsne_prjs', 'dvats/dr.py'),
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'dvats.dr.get_UMAP_prjs': ('dr.html#get_umap_prjs', 'dvats/dr.py'),
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'dvats.dr.get_gpu_memory': ('dr.html#get_gpu_memory', 'dvats/dr.py'),
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'dvats.dr.gpu_memory_status': ('dr.html#gpu_memory_status', 'dvats/dr.py')},
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'dvats.dr.get_UMAP_prjs': ('dr.html#get_umap_prjs', 'dvats/dr.py')},
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'dvats.encoder': { 'dvats.encoder.DCAE_torch': ('encoder.html#dcae_torch', 'dvats/encoder.py'),
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'dvats.encoder.DCAE_torch.__init__': ('encoder.html#__init__', 'dvats/encoder.py'),
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'dvats.encoder.DCAE_torch.forward': ('encoder.html#forward', 'dvats/encoder.py'),
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'dvats.encoder.color_for_percentage': ('encoder.html#color_for_percentage', 'dvats/encoder.py'),
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'dvats.encoder.create_bar': ('encoder.html#create_bar', 'dvats/encoder.py'),
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'dvats.encoder.get_enc_embs': ('encoder.html#get_enc_embs', 'dvats/encoder.py'),
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'dvats.encoder.get_enc_embs_set_stride_set_batch_size': ( 'encoder.html#get_enc_embs_set_stride_set_batch_size',
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'dvats/encoder.py'),
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'dvats.encoder.get_gpu_memory_': ('encoder.html#get_gpu_memory_', 'dvats/encoder.py'),
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'dvats.encoder.gpu_memory_status_': ('encoder.html#gpu_memory_status_', 'dvats/encoder.py')},
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'dvats/encoder.py')},
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'dvats.imports': {},
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'dvats.load': { 'dvats.load.TSArtifact': ('load.html#tsartifact', 'dvats/load.py'),
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'dvats.load.TSArtifact.__init__': ('load.html#__init__', 'dvats/load.py'),
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'dvats.load.wandb.apis.public.Artifact.to_df': ('load.html#wandb.apis.public.artifact.to_df', 'dvats/load.py'),
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'dvats.load.wandb.apis.public.Artifact.to_tsartifact': ( 'load.html#wandb.apis.public.artifact.to_tsartifact',
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'dvats/load.py')},
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'dvats.memory': { 'dvats.memory.color_for_percentage': ('memory.html#color_for_percentage', 'dvats/memory.py'),
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'dvats.memory.cpu_memory_status': ('memory.html#cpu_memory_status', 'dvats/memory.py'),
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'dvats.memory.create_bar': ('memory.html#create_bar', 'dvats/memory.py'),
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'dvats.memory.get_cpu_memory': ('memory.html#get_cpu_memory', 'dvats/memory.py'),
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'dvats.memory.get_gpu_memory': ('memory.html#get_gpu_memory', 'dvats/memory.py'),
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'dvats.memory.gpu_memory_status': ('memory.html#gpu_memory_status', 'dvats/memory.py')},
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'dvats.utils': { 'dvats.utils.Learner.export_and_get': ('utils.html#learner.export_and_get', 'dvats/utils.py'),
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'dvats.utils.PrintLayer': ('utils.html#printlayer', 'dvats/utils.py'),
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'dvats.utils.PrintLayer.__init__': ('utils.html#__init__', 'dvats/utils.py'),
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'dvats.utils.normalize_columns': ('utils.html#normalize_columns', 'dvats/utils.py'),
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'dvats.utils.py_function': ('utils.html#py_function', 'dvats/utils.py'),
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'dvats.utils.remove_constant_columns': ('utils.html#remove_constant_columns', 'dvats/utils.py'),
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'dvats.utils.update_patch': ('utils.html#update_patch', 'dvats/utils.py'),
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'dvats.utils.wandb.apis.public.Artifact.to_obj': ( 'utils.html#wandb.apis.public.artifact.to_obj',
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'dvats/utils.py')},
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'dvats.visualization': { 'dvats.visualization.plot_TS': ('visualization.html#plot_ts', 'dvats/visualization.py'),

‎dvats/_nbdev.py

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"encoder.py",
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"load.py",
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"utils.py",
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"visualization.py"]
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"visualization.py",
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"memory.py",
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"config.py",
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]
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doc_url = "https://vrodriguezf.github.io/tchub/"
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‎dvats/all.py

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from .imports import *
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from .load import *
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from .utils import *
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from .config import *
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from .memory import *
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from .dr import *
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from .encoder import *
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from .visualization import *
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from .visualization import *

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