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[bumpversion]
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- current_version = 0.29.4
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+ current_version = 0.29.5
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commit = True
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tag = True
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@@ -12,7 +12,7 @@ url = https://github.com/micom-dev/micom
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author = Christian Diener
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license = Apache License 2.0
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- classifiers =
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+ classifiers =
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Development Status :: 5 - Production/Stable
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Intended Audience :: Science/Research
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Topic :: Scientific/Engineering :: Bio-Informatics
@@ -22,7 +22,7 @@ classifiers =
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Programming Language :: Python :: 3.8
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Programming Language :: Python :: 3.9
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Programming Language :: Python :: 3.10
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- keywords =
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+ keywords =
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microbiome
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microbiota
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modeling
@@ -34,25 +34,25 @@ keywords =
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packages = find:
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zip_safe = True
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python_requires = >=3.7
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- install_requires =
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+ install_requires =
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cobra>=0.25.0
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jinja2>=2.10.0
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scikit-learn>=1.0.0
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scipy>=1.0.0
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symengine>=0.6.1
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osqp>=0.6.2
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- tests_require =
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+ tests_require =
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coverage
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pytest
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pytest-cov
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[options.packages.find]
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- exclude =
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+ exclude =
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docs
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tests
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[options.package_data]
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- micom =
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+ micom =
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data/*.csv
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data/*.gz
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data/templates/*.*
@@ -67,7 +67,7 @@ search = __version__ = "{current_version}"
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replace = __version__ = " {new_version}"
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[tool:pytest]
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- filterwarnings =
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+ filterwarnings =
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ignore::DeprecationWarning
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ignore::FutureWarning
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@@ -79,23 +79,23 @@ source = micom
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branch = True
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[coverage:report]
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- exclude_lines =
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+ exclude_lines =
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pragma: no cover
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-
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+
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def __repr__
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if self\.debug
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-
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+
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raise AssertionError
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raise NotImplementedError
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-
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+
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if 0:
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if __name__ == .__main__.:
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ignore_errors = True
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[flake8]
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exclude = tests/*, docs/*, versioneer.py, _version.py
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max-line-length = 88
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- ignore =
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+ ignore =
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E203
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W503
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D202
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