add check for sample IDs

cdiener · cdiener · commit 537cc487dc5a · 2024-08-02T14:20:02.000+02:00
diff --git a/micom/workflows/media.py b/micom/workflows/media.py
@@ -25,7 +25,7 @@ def process_medium(medium, samples):
     elif not all(s in medium.sample_id.unique() for s in samples):
         missing = [s for s in samples if s not in medium.sample_id.unique()]
         raise ValueError(
-            "The medium is missing samples from the manifest: {', '.join(missing)}."
+            f"The medium is missing samples from the manifest: {', '.join(missing)}."
         )
     return medium.drop_duplicates(subset=["reaction", "sample_id"])
 

Original file line number	Diff line number	Diff line change
`@@ -25,7 +25,7 @@ def process_medium(medium, samples):`
`25`	`25`	`elif not all(s in medium.sample_id.unique() for s in samples):`
`26`	`26`	`missing = [s for s in samples if s not in medium.sample_id.unique()]`
`27`	`27`	`raise ValueError(`
`28`		`- "The medium is missing samples from the manifest: {', '.join(missing)}."`
	`28`	`+ f"The medium is missing samples from the manifest: {', '.join(missing)}."`
`29`	`29`	`)`
`30`	`30`	`return medium.drop_duplicates(subset=["reaction", "sample_id"])`
`31`	`31`