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wchsinyi opened this issue Jun 22, 2019 · 0 comments
Open

installation issues #1

wchsinyi opened this issue Jun 22, 2019 · 0 comments

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@wchsinyi
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wchsinyi commented Jun 22, 2019 •
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I apologize as it seems really stupid, but I got the following error when I try to install the requirement. I can reinstall all the dependencies manually, but I wonder if you have a suggestion that is quicker (maybe using a virtual container of sorts? and if you can provide, say, a docker image file or a mkvirtualenv file?)

Password:
WARNING: The directory '/Users/makerpass/Library/Caches/pip/http' or its parent directory is not owned by the current user and the cache has been disabled. Please check the permissions and owner of that directory. If executing pip with sudo, you may want sudo's -H flag.
WARNING: The directory '/Users/makerpass/Library/Caches/pip' or its parent directory is not owned by the current user and caching wheels has been disabled. check the permissions and owner of that directory. If executing pip with sudo, you may want sudo's -H flag.
Collecting Django==1.10.5 (from -r requirements.txt (line 1))
  Downloading https://files.pythonhosted.org/packages/45/60/faa28a1d17f879f9dbef28f249e4e9a8dd1d29ae78409516b4b8b6c3ebab/Django-1.10.5-py2.py3-none-any.whl (6.8MB)
     |████████████████████████████████| 6.8MB 16.4MB/s 
Collecting matplotlib==1.5.1 (from -r requirements.txt (line 2))
  Downloading https://files.pythonhosted.org/packages/8f/f4/c0c7e81f64d5f4d36e52e393af687f28882c53dcd924419d684dc9859f40/matplotlib-1.5.1.tar.gz (54.0MB)
     |████████████████████████████████| 54.0MB 207kB/s 

Collecting more_itertools==2.5.0 (from -r requirements.txt (line 3))

  Downloading https://files.pythonhosted.org/packages/4c/7b/9b600d0e6e5eb394f6ac678798e9e1fc93f58dd7b62d5ab41970fad1929b/more_itertools-2.5.0-py3-none-any.whl
Collecting numpy==1.11.0 (from -r requirements.txt (line 4))
  Downloading https://files.pythonhosted.org/packages/1a/5c/57c6920bf4a1b1c11645b625e5483d778cedb3823ba21a017112730f0a12/numpy-1.11.0.tar.gz (4.2MB)
     |████████████████████████████████| 4.2MB 4.1MB/s 
Collecting pandas==0.19.2 (from -r requirements.txt (line 5))
  Downloading https://files.pythonhosted.org/packages/08/9d/31ec596099f14528fc6ad39428248ac5360f0bb5205a3ee79a5d1cf260fb/pandas-0.19.2.tar.gz (9.2MB)
     |████████████████████████████████| 9.2MB 3.9MB/s 
Collecting Pyomo==5.1.1 (from -r requirements.txt (line 6))
  Downloading https://files.pythonhosted.org/packages/61/82/285c1b4ea37f6d4508b91f6bf0433100442ee7b977f1a113e373ea14ac3e/Pyomo-5.1.1.tar.gz (1.1MB)
     |████████████████████████████████| 1.1MB 10.1MB/s 
Collecting pypsa==0.8.0 (from -r requirements.txt (line 7))
  Downloading https://files.pythonhosted.org/packages/b1/df/284abdbbc60905c7a2f2286c5507b03658dd3fbf7b10cc05a81fff6902bd/pypsa-0.8.0.tar.gz (61kB)
     |████████████████████████████████| 71kB 15.4MB/s 
Collecting django-webpack-loader==0.5.0 (from -r requirements.txt (line 8))
  Downloading https://files.pythonhosted.org/packages/6a/1d/3680c3cd7bf5a35a0ed451201fbdd93d7b17e63045d97bb8e2d4ba754e5f/django_webpack_loader-0.5.0-py2.py3-none-any.whl
Requirement already satisfied: python-dateutil in /usr/local/lib/python3.7/site-packages (from matplotlib==1.5.1->-r requirements.txt (line 2)) (2.8.0)
Requirement already satisfied: pytz in /usr/local/lib/python3.7/site-packages (from matplotlib==1.5.1->-r requirements.txt (line 2)) (2019.1)
Collecting cycler (from matplotlib==1.5.1->-r requirements.txt (line 2))
  Downloading https://files.pythonhosted.org/packages/f7/d2/e07d3ebb2bd7af696440ce7e754c59dd546ffe1bbe732c8ab68b9c834e61/cycler-0.10.0-py2.py3-none-any.whl
Requirement already satisfied: pyparsing!=2.0.4,>=1.5.6 in /usr/local/lib/python3.7/site-packages (from matplotlib==1.5.1->-r requirements.txt (line 2)) (2.2.2)
Requirement already satisfied: six<2.0.0,>=1.0.0 in /usr/local/lib/python3.7/site-packages (from more_itertools==2.5.0->-r requirements.txt (line 3)) (1.12.0)
Requirement already satisfied: PyUtilib>=5.4.1 in /usr/local/lib/python3.7/site-packages (from Pyomo==5.1.1->-r requirements.txt (line 6)) (5.7.0)
Requirement already satisfied: appdirs in /usr/local/lib/python3.7/site-packages (from Pyomo==5.1.1->-r requirements.txt (line 6)) (1.4.3)
Requirement already satisfied: ply in /usr/local/lib/python3.7/site-packages (from Pyomo==5.1.1->-r requirements.txt (line 6)) (3.11)
Requirement already satisfied: scipy in /usr/local/lib/python3.7/site-packages (from pypsa==0.8.0->-r requirements.txt (line 7)) (1.3.0)
Requirement already satisfied: networkx>=1.10 in /usr/local/lib/python3.7/site-packages (from pypsa==0.8.0->-r requirements.txt (line 7)) (2.3)
Requirement already satisfied: nose in /usr/local/lib/python3.7/site-packages (from PyUtilib>=5.4.1->Pyomo==5.1.1->-r requirements.txt (line 6)) (1.3.7)
Requirement already satisfied: decorator>=4.3.0 in /usr/local/lib/python3.7/site-packages (from networkx>=1.10->pypsa==0.8.0->-r requirements.txt (line 7)) (4.4.0)
Building wheels for collected packages: matplotlib, numpy, pandas, Pyomo, pypsa
  Building wheel for matplotlib (setup.py) ... done
  Stored in directory: /Users/makerpass/Library/Caches/pip/wheels/20/aa/a0/7f5b22abf34b2e8e07cac9b4dae93ec023cbc450e09dabb6b0
  Building wheel for numpy (setup.py) ... /


error
  ERROR: Complete output from command /usr/local/opt/python/bin/python3.7 -u -c 'import setuptools, tokenize;__file__='"'"'/private/tmp/pip-install-ihdpp2gz/numpy/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /private/tmp/pip-wheel-mfejd62v --python-tag cp37:
  ERROR: Running from numpy source directory.
  blas_opt_info:
  blas_mkl_info:
    libraries mkl,vml,guide not found in ['/usr/local/Cellar/python/3.7.3/Frameworks/Python.framework/Versions/3.7/lib', '/usr/local/lib', '/usr/lib']
    NOT AVAILABLE
  
  openblas_info:
    libraries openblas not found in ['/usr/local/Cellar/python/3.7.3/Frameworks/Python.framework/Versions/3.7/lib', '/usr/local/lib', '/usr/lib']
    NOT AVAILABLE
  
  atlas_3_10_blas_threads_info:
  Setting PTATLAS=ATLAS
    libraries tatlas not found in ['/usr/local/Cellar/python/3.7.3/Frameworks/Python.framework/Versions/3.7/lib', '/usr/local/lib', '/usr/lib']
    NOT AVAILABLE
  
  atlas_3_10_blas_info:
    libraries satlas not found in ['/usr/local/Cellar/python/3.7.3/Frameworks/Python.framework/Versions/3.7/lib', '/usr/local/lib', '/usr/lib']
    NOT AVAILABLE
  
  atlas_blas_threads_info:
  Setting PTATLAS=ATLAS
    libraries ptf77blas,ptcblas,atlas not found in ['/usr/local/Cellar/python/3.7.3/Frameworks/Python.framework/Versions/3.7/lib', '/usr/local/lib', '/usr/lib']
    NOT AVAILABLE
  
  atlas_blas_info:
    libraries f77blas,cblas,atlas not found in ['/usr/local/Cellar/python/3.7.3/Frameworks/Python.framework/Versions/3.7/lib', '/usr/local/lib', '/usr/lib']
    NOT AVAILABLE
  
    FOUND:
      extra_compile_args = ['-msse3', '-I/System/Library/Frameworks/vecLib.framework/Headers']
      extra_link_args = ['-Wl,-framework', '-Wl,Accelerate']
      define_macros = [('NO_ATLAS_INFO', 3), ('HAVE_CBLAS', None)]
  
  non-existing path in 'numpy/distutils': 'site.cfg'
  F2PY Version 2
  lapack_opt_info:
  openblas_lapack_info:
    libraries openblas not found in ['/usr/local/Cellar/python/3.7.3/Frameworks/Python.framework/Versions/3.7/lib', '/usr/local/lib', '/usr/lib']
    NOT AVAILABLE
  
  lapack_mkl_info:
  mkl_info:
    libraries mkl,vml,guide not found in ['/usr/local/Cellar/python/3.7.3/Frameworks/Python.framework/Versions/3.7/lib', '/usr/local/lib', '/usr/lib']
    NOT AVAILABLE
  
    NOT AVAILABLE
  
  atlas_3_10_threads_info:
  Setting PTATLAS=ATLAS
    libraries tatlas,tatlas not found in /usr/local/Cellar/python/3.7.3/Frameworks/Python.framework/Versions/3.7/lib
    libraries lapack_atlas not found in /usr/local/Cellar/python/3.7.3/Frameworks/Python.framework/Versions/3.7/lib
    libraries tatlas,tatlas not found in /usr/local/lib
    libraries lapack_atlas not found in /usr/local/lib
    libraries tatlas,tatlas not found in /usr/lib
    libraries lapack_atlas not found in /usr/lib
  <class 'numpy.distutils.system_info.atlas_3_10_threads_info'>
    NOT AVAILABLE
  
  atlas_3_10_info:
    libraries satlas,satlas not found in /usr/local/Cellar/python/3.7.3/Frameworks/Python.framework/Versions/3.7/lib
    libraries lapack_atlas not found in /usr/local/Cellar/python/3.7.3/Frameworks/Python.framework/Versions/3.7/lib
    libraries satlas,satlas not found in /usr/local/lib
    libraries lapack_atlas not found in /usr/local/lib
    libraries satlas,satlas not found in /usr/lib
    libraries lapack_atlas not found in /usr/lib
  <class 'numpy.distutils.system_info.atlas_3_10_info'>
    NOT AVAILABLE
  
  atlas_threads_info:
  Setting PTATLAS=ATLAS
    libraries ptf77blas,ptcblas,atlas not found in /usr/local/Cellar/python/3.7.3/Frameworks/Python.framework/Versions/3.7/lib
    libraries lapack_atlas not found in /usr/local/Cellar/python/3.7.3/Frameworks/Python.framework/Versions/3.7/lib
    libraries ptf77blas,ptcblas,atlas not found in /usr/local/lib
    libraries lapack_atlas not found in /usr/local/lib
    libraries ptf77blas,ptcblas,atlas not found in /usr/lib
    libraries lapack_atlas not found in /usr/lib
  <class 'numpy.distutils.system_info.atlas_threads_info'>
    NOT AVAILABLE
  
  atlas_info:
    libraries f77blas,cblas,atlas not found in /usr/local/Cellar/python/3.7.3/Frameworks/Python.framework/Versions/3.7/lib
    libraries lapack_atlas not found in /usr/local/Cellar/python/3.7.3/Frameworks/Python.framework/Versions/3.7/lib
    libraries f77blas,cblas,atlas not found in /usr/local/lib
    libraries lapack_atlas not found in /usr/local/lib
    libraries f77blas,cblas,atlas not found in /usr/lib
    libraries lapack_atlas not found in /usr/lib
  <class 'numpy.distutils.system_info.atlas_info'>
    NOT AVAILABLE
  
    FOUND:
      extra_compile_args = ['-msse3']
      extra_link_args = ['-Wl,-framework', '-Wl,Accelerate']
      define_macros = [('NO_ATLAS_INFO', 3), ('HAVE_CBLAS', None)]
  
  /usr/local/Cellar/python/3.7.3/Frameworks/Python.framework/Versions/3.7/lib/python3.7/distutils/dist.py:274: UserWarning: Unknown distribution option: 'define_macros'
    warnings.warn(msg)
  running bdist_wheel
  running build
  running config_cc
  unifing config_cc, config, build_clib, build_ext, build commands --compiler options
  running config_fc
  unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options
  running build_src
  build_src
  building py_modules sources
  creating build
  creating build/src.macosx-10.11-x86_64-3.7
  creating build/src.macosx-10.11-x86_64-3.7/numpy
  creating build/src.macosx-10.11-x86_64-3.7/numpy/distutils
  building library "npymath" sources
  customize Gnu95FCompiler
  Found executable /usr/local/bin/gfortran
  customize Gnu95FCompiler
  customize Gnu95FCompiler using config
  C compiler: clang -Wno-unused-result -Wsign-compare -Wunreachable-code -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall
  
  compile options: '-Inumpy/core/src/private -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/src/npysort -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/sqlite/include -I/usr/local/Cellar/python/3.7.3/Frameworks/Python.framework/Versions/3.7/include/python3.7m -c'
  clang: _configtest.c
  clang _configtest.o -o _configtest
  success!
  removing: _configtest.c _configtest.o _configtest
  C compiler: clang -Wno-unused-result -Wsign-compare -Wunreachable-code -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall
  
  compile options: '-Inumpy/core/src/private -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/src/npysort -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/sqlite/include -I/usr/local/Cellar/python/3.7.3/Frameworks/Python.framework/Versions/3.7/include/python3.7m -c'
  clang: _configtest.c
  _configtest.c:1:5: warning: incompatible redeclaration of library function 'exp' [-Wincompatible-library-redeclaration]
  int exp (void);
      ^
  _configtest.c:1:5: note: 'exp' is a builtin with type 'double (double)'
  1 warning generated.
  clang _configtest.o -o _configtest
  success!
  removing: _configtest.c _configtest.o _configtest
  creating build/src.macosx-10.11-x86_64-3.7/numpy/core
  creating build/src.macosx-10.11-x86_64-3.7/numpy/core/src
  creating build/src.macosx-10.11-x86_64-3.7/numpy/core/src/npymath
  conv_template:> build/src.macosx-10.11-x86_64-3.7/numpy/core/src/npymath/npy_math.c
  conv_template:> build/src.macosx-10.11-x86_64-3.7/numpy/core/src/npymath/ieee754.c
  conv_template:> build/src.macosx-10.11-x86_64-3.7/numpy/core/src/npymath/npy_math_complex.c
  building library "npysort" sources
  creating build/src.macosx-10.11-x86_64-3.7/numpy/core/src/npysort
  conv_template:> build/src.macosx-10.11-x86_64-3.7/numpy/core/src/npysort/quicksort.c
  conv_template:> build/src.macosx-10.11-x86_64-3.7/numpy/core/src/npysort/mergesort.c
  conv_template:> build/src.macosx-10.11-x86_64-3.7/numpy/core/src/npysort/heapsort.c
  creating build/src.macosx-10.11-x86_64-3.7/numpy/core/src/private
  conv_template:> build/src.macosx-10.11-x86_64-3.7/numpy/core/src/private/npy_partition.h
    adding 'build/src.macosx-10.11-x86_64-3.7/numpy/core/src/private' to include_dirs.
  conv_template:> build/src.macosx-10.11-x86_64-3.7/numpy/core/src/npysort/selection.c
  conv_template:> build/src.macosx-10.11-x86_64-3.7/numpy/core/src/private/npy_binsearch.h
  conv_template:> build/src.macosx-10.11-x86_64-3.7/numpy/core/src/npysort/binsearch.c
  None - nothing done with h_files = ['build/src.macosx-10.11-x86_64-3.7/numpy/core/src/private/npy_partition.h', 'build/src.macosx-10.11-x86_64-3.7/numpy/core/src/private/npy_binsearch.h']
  building extension "numpy.core._dummy" sources
  Generating build/src.macosx-10.11-x86_64-3.7/numpy/core/include/numpy/config.h
  C compiler: clang -Wno-unused-result -Wsign-compare -Wunreachable-code -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall
  
  compile options: '-Inumpy/core/src/private -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/src/npysort -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/sqlite/include -I/usr/local/Cellar/python/3.7.3/Frameworks/Python.framework/Versions/3.7/include/python3.7m -c'
  clang: _configtest.c
  success!
  removing: _configtest.c _configtest.o
  C compiler: clang -Wno-unused-result -Wsign-compare -Wunreachable-code -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall
  
  compile options: '-Inumpy/core/src/private -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/src/npysort -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/sqlite/include -I/usr/local/Cellar/python/3.7.3/Frameworks/Python.framework/Versions/3.7/include/python3.7m -c'
  clang: _configtest.c
  _configtest.c:1:10: fatal error: 'endian.h' file not found
  #include <endian.h>
           ^~~~~~~~~~
  1 error generated.
  _configtest.c:1:10: fatal error: 'endian.h' file not found
  #include <endian.h>
           ^~~~~~~~~~
  1 error generated.
  failure.
  removing: _configtest.c _configtest.o
  C compiler: clang -Wno-unused-result -Wsign-compare -Wunreachable-code -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall
  
  compile options: '-Inumpy/core/src/private -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/src/npysort -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/sqlite/include -I/usr/local/Cellar/python/3.7.3/Frameworks/Python.framework/Versions/3.7/include/python3.7m -c'
  clang: _configtest.c
  success!
  removing: _configtest.c _configtest.o
  C compiler: clang -Wno-unused-result -Wsign-compare -Wunreachable-code -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall
  
  compile options: '-Inumpy/core/src/private -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/src/npysort -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/sqlite/include -I/usr/local/Cellar/python/3.7.3/Frameworks/Python.framework/Versions/3.7/include/python3.7m -c'
  clang: _configtest.c
  success!
  removing: _configtest.c _configtest.o
  C compiler: clang -Wno-unused-result -Wsign-compare -Wunreachable-code -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall
  
  compile options: '-Inumpy/core/src/private -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/src/npysort -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/sqlite/include -I/usr/local/Cellar/python/3.7.3/Frameworks/Python.framework/Versions/3.7/include/python3.7m -c'
  clang: _configtest.c
  success!
  removing: _configtest.c _configtest.o
  C compiler: clang -Wno-unused-result -Wsign-compare -Wunreachable-code -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall
  
  compile options: '-Inumpy/core/src/private -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/src/npysort -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/sqlite/include -I/usr/local/Cellar/python/3.7.3/Frameworks/Python.framework/Versions/3.7/include/python3.7m -c'
  clang: _configtest.c
  success!
  removing: _configtest.c _configtest.o
  C compiler: clang -Wno-unused-result -Wsign-compare -Wunreachable-code -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall
  
  compile options: '-Inumpy/core/src/private -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/src/npysort -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/sqlite/include -I/usr/local/Cellar/python/3.7.3/Frameworks/Python.framework/Versions/3.7/include/python3.7m -c'
  clang: _configtest.c
  removing: _configtest.c _configtest.o
  C compiler: clang -Wno-unused-result -Wsign-compare -Wunreachable-code -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall
  
  compile options: '-Inumpy/core/src/private -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/src/npysort -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/sqlite/include -I/usr/local/Cellar/python/3.7.3/Frameworks/Python.framework/Versions/3.7/include/python3.7m -c'
  clang: _configtest.c
  removing: _configtest.c _configtest.o
  C compiler: clang -Wno-unused-result -Wsign-compare -Wunreachable-code -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall
  
  compile options: '-Inumpy/core/src/private -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/src/npysort -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/sqlite/include -I/usr/local/Cellar/python/3.7.3/Frameworks/Python.framework/Versions/3.7/include/python3.7m -c'
  clang: _configtest.c
  removing: _configtest.c _configtest.o
  C compiler: clang -Wno-unused-result -Wsign-compare -Wunreachable-code -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall
  
  compile options: '-Inumpy/core/src/private -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/src/npysort -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/sqlite/include -I/usr/local/Cellar/python/3.7.3/Frameworks/Python.framework/Versions/3.7/include/python3.7m -c'
  clang: _configtest.c
  removing: _configtest.c _configtest.o
  C compiler: clang -Wno-unused-result -Wsign-compare -Wunreachable-code -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall
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