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Description
It does not display the compression settings for in-memory files:
import numpy as np
import hdf5plugin
from pynwb import TimeSeries
from pynwb.testing.mock.file import mock_NWBFile
from hdmf.backends.hdf5.h5_utils import H5DataIO
# Sample data
data = np.arange(1000)
timestamps = np.arange(1000)
# Wrap data with BLOSC + Zstd level 5
wrapped_data = H5DataIO(
data=data,
**hdf5plugin.Blosc(cname="zstd", clevel=5),
allow_plugin_filters=True,
)
# Add TimeSeries with compressed data
ts = TimeSeries(
name="compressed_timeseries",
data=wrapped_data,
unit="SIunit",
timestamps=timestamps,
)
nwbfile = mock_NWBFile()
nwbfile.add_acquisition(ts)
nwbfile.acquisition["compressed_timeseries"]
Output:
And neither it does it for the files after reading from disk:
from pynwb import NWBHDF5IO
from pynwb import read_nwb
with NWBHDF5IO("compressed_timeseries.nwb", "w") as io:
io.write(nwbfile)
read_nwb("compressed_timeseries.nwb").acquisition["compressed_timeseries"]