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Version 1.4.0

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Last updated Apr 10, 2025
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  • Create subrun command to partially run jasen modules

    improvement
    mediumMedium priority
    Status: Open.
    #355 In genomic-medicine-sweden/jasen;
    · ryanjameskennedy opened on Oct 3, 2024

  • Add kleborate to kpneumoniae workflow

    mediumMedium priority
    new analysis
    Status: Open.
    #404 In genomic-medicine-sweden/jasen;
    · ryanjameskennedy opened on Feb 18, 2025

  • Change kpneumoniae cgmlst scheme to pasteur scheme

    improvement
    mediumMedium priority
    Status: Open.
    #405 In genomic-medicine-sweden/jasen;
    · ryanjameskennedy opened on Feb 18, 2025

  • Add general gram negative workflow

    improvement
    mediumMedium priority
    Status: Open.
    #286 In genomic-medicine-sweden/jasen;
    · ryanjameskennedy opened on Apr 11, 2024

  • Add trim adapters optional module

    improvement
    mediumMedium priority
    Status: Open.
    #280 In genomic-medicine-sweden/jasen;
    · ryanjameskennedy opened on Apr 4, 2024

  • Add plasmid detection

    improvement
    mediumMedium priority
    Status: Open.
    #281 In genomic-medicine-sweden/jasen;
    · ryanjameskennedy opened on Apr 4, 2024

  • Intraspecies contamination check

    improvement
    mediumMedium priority
    Status: Open.
    #183 In genomic-medicine-sweden/jasen;
    · LordRust opened on Sep 21, 2023

  • Move configs to separate repo

    improvement
    Status: Open.
    #393 In genomic-medicine-sweden/jasen;
    · mhkc opened on Feb 3, 2025
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