Include messages while testing signaling conditions (#335)

rempsyc · web-flow · commit 042fa337a55e · 2023-02-04T13:00:30.000-05:00
* include messages while testing signaling conditions, update authorships

* update NEWS file
diff --git a/DESCRIPTION b/DESCRIPTION
@@ -1,7 +1,7 @@
 Type: Package
 Package: report
 Title: Automated Reporting of Results and Statistical Models
-Version: 0.5.5.4
+Version: 0.5.6
 Authors@R:
     c(person(given = "Dominique",
              family = "Makowski",
@@ -13,26 +13,26 @@ Authors@R:
              role = "aut",
              email = "d.luedecke@uke.de",
              comment = c(ORCID = "0000-0002-8895-3206", Twitter = "@strengejacke")),
-      person(given = "Mattan S.",
-             family = "Ben-Shachar",
-             role = "aut",
-             email = "matanshm@post.bgu.ac.il",
-             comment = c(ORCID = "0000-0002-4287-4801", Twitter = "@mattansb")),
       person(given = "Indrajeet",
              family = "Patil",
              role = "aut",
              email = "patilindrajeet.science@gmail.com",
              comment = c(ORCID = "0000-0003-1995-6531", Twitter = "@patilindrajeets")),
+      person(given = "Rémi", 
+             family = "Thériault",
+             role = c("aut", "cre"), 
+             email = "remi.theriault@mail.mcgill.ca",
+             comment = c(ORCID = "0000-0003-4315-6788", Twitter = "@rempsyc")),
+      person(given = "Mattan S.",
+             family = "Ben-Shachar",
+             role = "aut",
+             email = "matanshm@post.bgu.ac.il",
+             comment = c(ORCID = "0000-0002-4287-4801", Twitter = "@mattansb")),
       person(given = "Brenton M.",
              family = "Wiernik",
              role = "aut",
              email = "brenton@wiernik.org",
              comment = c(ORCID = "0000-0001-9560-6336", Twitter = "@bmwiernik")),
-       person(given = "Rémi", 
-             family = "Thériault",
-             role = c("aut", "cre"), 
-             email = "remi.theriault@mail.mcgill.ca",
-             comment = c(ORCID = "0000-0003-4315-6788", Twitter = "@rempsyc")),
       person(given = "Rudolf",
              family = "Siegel",
              role = "ctb",
@@ -59,8 +59,6 @@ Imports:
     stats,
     tools,
     utils
-Remotes:
-    easystats/effectsize
 Suggests:
     brms,
     ivreg,
@@ -76,7 +74,7 @@ VignetteBuilder:
     knitr
 Encoding: UTF-8
 Language: en-US
-RoxygenNote: 7.2.3.9000
+RoxygenNote: 7.2.3
 Config/testthat/edition: 3
 Config/Needs/website:
     rstudio/bslib,
diff --git a/NEWS.md b/NEWS.md
@@ -1,4 +1,4 @@
-# report (development version)
+# report 0.5.6
 
 Breaking Changes
 
diff --git a/R/cite_easystats.R b/R/cite_easystats.R
@@ -102,7 +102,7 @@ cite_easystats <- function(packages = "easystats",
     cit_packages <- sprintf(
       "(%s)",
       toString(c(
-        easystats = sprintf("L\u00fcdecke et al., 2019/2022%s", letters_ludeckePackages[1]),
+        easystats = sprintf("L\u00fcdecke et al., 2019/2023%s", letters_ludeckePackages[1]),
         insight = sprintf("L\u00fcdecke et al., 2019, 2019/2022%s", letters_ludeckePackages[2]),
         datawizard = sprintf("Makowski et al., 2021/2022%s", letters_makowskiPackages[1]),
         bayestestR = sprintf("Makowski et al., 2019, 2019/2022%s", letters_makowskiPackages[2]),
@@ -118,7 +118,7 @@ cite_easystats <- function(packages = "easystats",
           "L\u00fcdecke et al., 2021%s, 2019/2022%s",
           letters_ludeckeArticles[2], letters_ludeckePackages[5]
         ),
-        report = sprintf("Makowski et al., 2021/2022%s", letters_makowskiPackages[5])
+        report = sprintf("Makowski et al., 2021/2023%s", letters_makowskiPackages[5])
       )[packages])
     )
   } else if (format == "markdown") {
@@ -180,9 +180,10 @@ cite_easystats <- function(packages = "easystats",
       sort(unlist(list(
         easystats = sprintf(
           paste(
-            "L\u00fcdecke, D., Makowski, D., Ben-Shachar, M. S., Patil, I., & Wiernik, B. M. (2022).",
+            "L\u00fcdecke, D., Makowski, D., Ben-Shachar, M. S., Patil, I., Wiernik, B. M.,",
+            "Bacher, Etienne, & Th\U00E9riault, R. (2023).",
             "easystats: Streamline model interpretation, visualization, and reporting%s [R package].",
-            "https://github.com/easystats/easystats (Original work published 2019)"
+            "https://easystats.github.io/easystats/ (Original work published 2019)"
           ),
           ifelse(installed_packages["easystats"] == "", "", paste0(" (", installed_packages["easystats"], ")"))
         ),
@@ -316,10 +317,10 @@ cite_easystats <- function(packages = "easystats",
         ),
         report = sprintf(
           paste(
-            "Makowski, D., L\u00fcdecke, D., Ben-Shachar, M. S., Patil, I.,",
-            "Wiernik, B. M., & Th\U00E9riault, R. (2022).",
+            "Makowski, D., L\u00fcdecke, D., Patil, I., Th\U00E9riault, R., Ben-Shachar, M. S.,",
+            "& Wiernik, B. M. (2023).",
             "report: Automated reporting of results and statistical models (%s) [R package].",
-            "https://CRAN.R-project.org/package=report (Original work published 2021)"
+            "https://easystats.github.io/easystats/ (Original work published 2021)"
           ),
           installed_packages["report"]
         )
diff --git a/inst/CITATION b/inst/CITATION
@@ -1,8 +1,8 @@
 bibentry(bibtype = "Article",
          title = "Automated Results Reporting as a Practical Tool to Improve Reproducibility and Methodological Best Practices Adoption",
-         author=c(person("Dominique", "Makowski"), person("Daniel", "Lüdecke"), person("Mattan S.", "Ben-Shachar"), person("Indrajeet", "Patil"), person("Brenton M.", "Wiernik"), person("Rémi", "Thériault")),
-         year = 2021,
+         author=c(person("Dominique", "Makowski"), person("Daniel", "Lüdecke"), person("Indrajeet", "Patil"), person("Rémi", "Thériault")), person("Mattan S.", "Ben-Shachar"), person("Brenton M.", "Wiernik"),
+         year = 2023,
          journal = "CRAN",
          url = "https://easystats.github.io/report/",
-         	textVersion = paste("Makowski, D., Ben-Shachar, M.S., Patil, I., Lüdecke, D., & Thériault, R. (2020). Automated Results Reporting as a Practical Tool to Improve Reproducibility and Methodological Best Practices Adoption. CRAN.", "Available from https://easystats.github.io/report/", "doi: .",  sep=" "),
+         	textVersion = paste("Makowski, D., Lüdecke, D., Patil, I., Thériault, R., Ben-Shachar, M.S., & Wiernik, B.M. (2023). Automated Results Reporting as a Practical Tool to Improve Reproducibility and Methodological Best Practices Adoption. CRAN.", "Available from https://easystats.github.io/report/", "doi: .",  sep=" "),
           mheader = "To cite in publications use:")
diff --git a/inst/easystats_bib.bib b/inst/easystats_bib.bib
@@ -68,11 +68,11 @@ @software{datawizardPackage
 @software{easystatsPackage,
   title = {{{easystats}}: Streamline Model Interpretation, Visualization, and Reporting},
   shorttitle = {{{easystats}}},
-  author = {L\"udecke, Daniel and Makowski, Dominique and Ben-Shachar, Mattan S. and Patil, Indrajeet and Wiernik, Brenton M.},
-  date = {2022-03-27T22:06:06Z},
+  author = {L\"udecke, Daniel and Makowski, Dominique and Ben-Shachar, Mattan S. and Patil, Indrajeet and Wiernik, Brenton M. and Bacher, Etienne and Thériault, Rémi },
+  date = {2023-02-04T22:06:06Z},
   origdate = {2019-01-28T10:39:29Z},
-  url = {https://github.com/easystats/easystats},
-  urldate = {2022-03-28},
+  url = {https://easystats.github.io/easystats/},
+  urldate = {2023-02-04},
   version = {%s}
 }
 
@@ -201,11 +201,11 @@ @software{performancePackage
 @software{reportPackage,
   title = {{{report}}: Automated Reporting of Results and Statistical Models},
   shorttitle = {{{report}}},
-  author = {Makowski, Dominique and L\"udecke, Daniel and Ben-Shachar, Mattan S. and Patil, Indrajeet and Wiernik, Brenton M. and Thériault, Rémi},
-  date = {2022-02-22},
+  author = {Makowski, Dominique and L\"udecke, Daniel and Patil, Indrajeet and Thériault, Rémi and Ben-Shachar, Mattan S. and Wiernik, Brenton M.},
+  date = {2023-02-04},
   origdate = {2021-04-15},
-  url = {https://CRAN.R-project.org/package=report},
-  urldate = {2022-01-28},
+  url = {https://easystats.github.io/report/},
+  urldate = {2023-02-04},
   abstract = {The aim of the 'report' package is to bridge the gap between R's output and the formatted results contained in your manuscript. This package converts statistical models and data frames into textual reports suited for publication, ensuring standardization and quality in results reporting.},
   version = {%s}
 }
diff --git a/inst/easystats_bib.yaml b/inst/easystats_bib.yaml
@@ -178,9 +178,9 @@ references:
 
 - id: easystatsPackage
   accessed:
-    - year: 2022
-      month: 3
-      day: 28
+    - year: 2023
+      month: 2
+      day: 4
   author:
     - family: Lüdecke
       given: Daniel
@@ -192,12 +192,16 @@ references:
       given: Indrajeet
     - family: Wiernik
       given: Brenton M.
+    - family: Bacher
+      given: Etienne
+    - family: Thériault
+      given: Rémi
   citation-key: easystatsPackage
   genre: R package
   issued:
-    - year: 2022
-      month: 3
-      day: 27
+    - year: 2023
+      month: 2
+      day: 4
   original-date:
     - year: 2019
       month: 1
@@ -207,7 +211,7 @@ references:
     visualization, and reporting
   title-short: <span class="nocase">easystats</span>
   type: software
-  URL: https://github.com/easystats/easystats
+  URL: https://easystats.github.io/easystats/
   version: %s
 
 - id: effectsizeArticle
@@ -555,28 +559,28 @@ references:
     statistical models and data frames into textual reports suited for
     publication, ensuring standardization and quality in results reporting.
   accessed:
-    - year: 2022
-      month: 1
-      day: 28
+    - year: 2023
+      month: 2
+      day: 4
   author:
     - family: Makowski
       given: Dominique
     - family: Lüdecke
       given: Daniel
-    - family: Ben-Shachar
-      given: Mattan S.
     - family: Patil
       given: Indrajeet
-    - family: Wiernik
-      given: Brenton M.
     - family: Thériault
       given: Rémi
+    - family: Ben-Shachar
+      given: Mattan S.
+    - family: Wiernik
+      given: Brenton M.
   citation-key: reportPackage
   genre: R package
   issued:
-    - year: 2022
+    - year: 2023
       month: 2
-      day: 22
+      day: 04
   original-date:
     - year: 2021
       month: 4
@@ -586,7 +590,7 @@ references:
     statistical models
   title-short: <span class="nocase">report</span>
   type: software
-  URL: https://CRAN.R-project.org/package=report
+  URL: https://easystats.github.io/easystats/
   version: %s
 
 - id: seeArticle
diff --git a/man/report-package.Rd b/man/report-package.Rd
diff --git a/tests/testthat/test-report.aov.R b/tests/testthat/test-report.aov.R
@@ -48,7 +48,7 @@ test_that("report.aov", {
 
   model <- aov(Sepal.Length ~ Species * Cat1 + Error(Cat2), data = data)
   r5 <- report(model, verbose = FALSE)
-  expect_warning(report(model))
+  expect_warning(report(model), "non-finite")
   expect_equal(
     c(
       ncol(as.report_table(r5, summary = TRUE)),
diff --git a/tests/testthat/test-report.data.frame.R b/tests/testthat/test-report.data.frame.R
@@ -17,7 +17,7 @@ test_that("report.numeric", {
   expect_null(summary(as.data.frame(r))$Mean)
   expect_null(summary(as.data.frame(r))$Min)
   expect_null(summary(as.data.frame(r))$MAD)
-  expect_warning(report(c(0, 0, 0, 1, 1)))
+  expect_warning(report(c(0, 0, 0, 1, 1)), "factor")
 })
 
 

Original file line number	Diff line number	Diff line change
`@@ -1,4 +1,4 @@`
`1`		`-# report (development version)`
	`1`	`+# report 0.5.6`
`2`	`2`
`3`	`3`	`Breaking Changes`
`4`	`4`