Missing peak in chrom.map_peaks() exits loop

[connor-pl-delaney]

Thanks for making this package - it's really well done!

I noticed that if a mapped peak is absent from the peak list, all subsequent mappings are ignored, even if they are present in the chromatogram. I traced the issue back to line 1060 of quant.py, where the loop breaks when an absent peak is identified. Changing from "break" to "continue" seems like a more intuitive outcome, where all present peaks are mapped and then a warning is raised for each absent peak. I don't really know how to use git so I thought I'd leave this here.

[gchure]

Hi @connor-pl-delaney, thanks for filing this issue! I will take a look at what's going on. In the mean time, could you please provide a minimal failing example? A sample chromatogram and a copy of a script where I could reproduce the failure will help me patch a fix.

[connor-pl-delaney]

Thanks for getting back to me! I don't have permission to share the data I am working with publically, so I will try to reproduce the issue with some synthetic data or my own chromatograms and get back to you soon.