differences for PR #70

Author: actions-user

basic-targets.md

@@ -375,13 +375,13 @@ The following objects are masked from ‘package:datasets’:
 
     penguins, penguins_raw
 
-▶ dispatched target penguins_csv_file
-● completed target penguins_csv_file [0.001 seconds, 189 bytes]
-▶ dispatched target penguins_data_raw
-● completed target penguins_data_raw [0.099 seconds, 10.4 kilobytes]
-▶ dispatched target penguins_data
-● completed target penguins_data [0.007 seconds, 1.612 kilobytes]
-▶ ended pipeline [0.203 seconds]
++ penguins_csv_file dispatched
+✔ penguins_csv_file completed [1ms, 189 B]
++ penguins_data_raw dispatched
+✔ penguins_data_raw completed [135ms, 10.40 kB]
++ penguins_data dispatched
+✔ penguins_data completed [6ms, 1.61 kB]
+✔ ended pipeline [363ms, 3 completed, 0 skipped]
 ```
 
 Congratulations, you've run your first workflow with `targets`!

branch.md

@@ -93,10 +93,9 @@ The following objects are masked from ‘package:datasets’:
 
     penguins, penguins_raw
 
-✔ skipping targets (1 so far)...
-▶ dispatched target combined_model
-● completed target combined_model [0.012 seconds, 11.2 kilobytes]
-▶ ended pipeline [0.121 seconds]
++ combined_model dispatched
+✔ combined_model completed [14ms, 11.20 kB]
+✔ ended pipeline [121ms, 1 completed, 3 skipped]
 ```
 
 Let's have a look at the model. We will use the `glance()` function from the `broom` package. Unlike base R `summary()`, this function returns output as a tibble (the tidyverse equivalent of a dataframe), which as we will see later is quite useful for downstream analyses.
@@ -181,22 +180,21 @@ The following objects are masked from ‘package:datasets’:
 
     penguins, penguins_raw
 
-✔ skipping targets (1 so far)...
-▶ dispatched target adelie_model
-● completed target adelie_model [0.009 seconds, 6.475 kilobytes]
-▶ dispatched target gentoo_model
-● completed target gentoo_model [0.001 seconds, 5.878 kilobytes]
-▶ dispatched target chinstrap_model
-● completed target chinstrap_model [0.001 seconds, 4.534 kilobytes]
-▶ dispatched target combined_summary
-● completed target combined_summary [0.007 seconds, 346 bytes]
-▶ dispatched target adelie_summary
-● completed target adelie_summary [0.002 seconds, 346 bytes]
-▶ dispatched target gentoo_summary
-● completed target gentoo_summary [0.002 seconds, 346 bytes]
-▶ dispatched target chinstrap_summary
-● completed target chinstrap_summary [0.002 seconds, 346 bytes]
-▶ ended pipeline [0.155 seconds]
++ adelie_model dispatched
+✔ adelie_model completed [13ms, 6.47 kB]
++ gentoo_model dispatched
+✔ gentoo_model completed [44ms, 5.88 kB]
++ chinstrap_model dispatched
+✔ chinstrap_model completed [2ms, 4.53 kB]
++ combined_summary dispatched
+✔ combined_summary completed [6ms, 346 B]
++ adelie_summary dispatched
+✔ adelie_summary completed [3ms, 346 B]
++ gentoo_summary dispatched
+✔ gentoo_summary completed [3ms, 346 B]
++ chinstrap_summary dispatched
+✔ chinstrap_summary completed [4ms, 346 B]
+✔ ended pipeline [368ms, 7 completed, 4 skipped]
 ```
 
 Let's look at the summary of one of the models:
@@ -293,19 +291,13 @@ The following objects are masked from ‘package:datasets’:
 
     penguins, penguins_raw
 
-✔ skipping targets (1 so far)...
-▶ dispatched target combined_summary
-● completed target combined_summary [0.018 seconds, 346 bytes]
-▶ dispatched target penguins_data_grouped
-● completed target penguins_data_grouped [0.01 seconds, 1.525 kilobytes]
-▶ dispatched branch species_summary_7fe6634f7c7f6a77
-● completed branch species_summary_7fe6634f7c7f6a77 [0.006 seconds, 346 bytes]
-▶ dispatched branch species_summary_c580675a85977909
-● completed branch species_summary_c580675a85977909 [0.003 seconds, 346 bytes]
-▶ dispatched branch species_summary_af3bb92d1b0f36d3
-● completed branch species_summary_af3bb92d1b0f36d3 [0.003 seconds, 346 bytes]
-● completed pattern species_summary 
-▶ ended pipeline [0.165 seconds]
++ combined_summary dispatched
+✔ combined_summary completed [8ms, 346 B]
++ penguins_data_grouped dispatched
+✔ penguins_data_grouped completed [5ms, 1.52 kB]
++ species_summary declared [3 branches]
+✔ species_summary completed [11ms, 1.04 kB]
+✔ ended pipeline [324ms, 5 completed, 3 skipped]
 ```
 
 There is a series of smaller targets (branches) that are each named like species_summary_7fe6634f7c7f6a77, then one overall `species_summary` target.
@@ -413,17 +405,11 @@ The following objects are masked from ‘package:datasets’:
 
     penguins, penguins_raw
 
-✔ skipping targets (1 so far)...
-▶ dispatched target combined_summary
-● completed target combined_summary [0.028 seconds, 369 bytes]
-▶ dispatched branch species_summary_7fe6634f7c7f6a77
-● completed branch species_summary_7fe6634f7c7f6a77 [0.01 seconds, 366 bytes]
-▶ dispatched branch species_summary_c580675a85977909
-● completed branch species_summary_c580675a85977909 [0.005 seconds, 370 bytes]
-▶ dispatched branch species_summary_af3bb92d1b0f36d3
-● completed branch species_summary_af3bb92d1b0f36d3 [0.005 seconds, 367 bytes]
-● completed pattern species_summary 
-▶ ended pipeline [0.173 seconds]
++ combined_summary dispatched
+✔ combined_summary completed [24ms, 369 B]
++ species_summary declared [3 branches]
+✔ species_summary completed [105ms, 1.10 kB]
+✔ ended pipeline [320ms, 4 completed, 4 skipped]
 ```
 
 And this time, when we load the `model_summaries`, we can tell which model corresponds to which row (the `.before = 1` in `mutate()` ensures that it shows up before the other columns).
@@ -584,28 +570,17 @@ The following objects are masked from ‘package:datasets’:
 
     penguins, penguins_raw
 
-✔ skipping targets (1 so far)...
-▶ dispatched target penguins_data
-● completed target penguins_data [0.023 seconds, 1.525 kilobytes]
-▶ dispatched target combined_summary
-● completed target combined_summary [0.013 seconds, 369 bytes]
-▶ dispatched branch species_summary_1598bb4431372f32
-● completed branch species_summary_1598bb4431372f32 [0.009 seconds, 366 bytes]
-▶ dispatched branch species_summary_6b9109ba2e9d27fd
-● completed branch species_summary_6b9109ba2e9d27fd [0.005 seconds, 370 bytes]
-▶ dispatched branch species_summary_625f9fbc7f62298a
-● completed branch species_summary_625f9fbc7f62298a [0.005 seconds, 367 bytes]
-● completed pattern species_summary 
-▶ dispatched target combined_predictions
-● completed target combined_predictions [0.007 seconds, 25.907 kilobytes]
-▶ dispatched branch species_predictions_1598bb4431372f32
-● completed branch species_predictions_1598bb4431372f32 [0.008 seconds, 11.581 kilobytes]
-▶ dispatched branch species_predictions_6b9109ba2e9d27fd
-● completed branch species_predictions_6b9109ba2e9d27fd [0.011 seconds, 6.245 kilobytes]
-▶ dispatched branch species_predictions_625f9fbc7f62298a
-● completed branch species_predictions_625f9fbc7f62298a [0.005 seconds, 9.624 kilobytes]
-● completed pattern species_predictions 
-▶ ended pipeline [0.238 seconds]
++ penguins_data dispatched
+✔ penguins_data completed [24ms, 1.52 kB]
++ combined_summary dispatched
+✔ combined_summary completed [14ms, 369 B]
++ species_summary declared [3 branches]
+✔ species_summary completed [23ms, 1.10 kB]
++ combined_predictions dispatched
+✔ combined_predictions completed [9ms, 25.91 kB]
++ species_predictions declared [3 branches]
+✔ species_predictions completed [24ms, 27.45 kB]
+✔ ended pipeline [433ms, 9 completed, 2 skipped]
 ```
 
 ::::::::::::::::::::::::::::::::::::: {.callout}

files.md

@@ -55,9 +55,9 @@ tar_plan(
 
 
 ``` output
-▶ dispatched target some_data
-● completed target some_data [0.001 seconds, 63 bytes]
-▶ ended pipeline [0.079 seconds]
++ some_data dispatched
+✔ some_data completed [1ms, 63 B]
+✔ ended pipeline [94ms, 1 completed, 0 skipped]
 ```
 
 If we inspect the contents of `some_data` with `tar_read(some_data)`, it will contain the string `"Hello World"` as expected.
@@ -76,8 +76,7 @@ tar_plan(
 
 
 ``` output
-✔ skipping targets (1 so far)...
-✔ skipped pipeline [0.066 seconds]
+✔ skipped pipeline [49ms, 1 skipped]
 ```
 
 The target `some_data` was skipped, even though the contents of the file changed.
@@ -97,11 +96,11 @@ tar_plan(
 
 
 ``` output
-▶ dispatched target data_file
-● completed target data_file [0 seconds, 26 bytes]
-▶ dispatched target some_data
-● completed target some_data [0 seconds, 77 bytes]
-▶ ended pipeline [0.096 seconds]
++ data_file dispatched
+✔ data_file completed [0ms, 26 B]
++ some_data dispatched
+✔ some_data completed [1ms, 77 B]
+✔ ended pipeline [130ms, 2 completed, 0 skipped]
 ```
 
 This time we see that `targets` does successfully re-build `some_data` as expected.
@@ -190,13 +189,13 @@ The following objects are masked from ‘package:datasets’:
 
     penguins, penguins_raw
 
-▶ dispatched target penguins_data_raw_file
-● completed target penguins_data_raw_file [0.001 seconds, 53.098 kilobytes]
-▶ dispatched target penguins_data_raw
-● completed target penguins_data_raw [0.097 seconds, 10.4 kilobytes]
-▶ dispatched target penguins_data
-● completed target penguins_data [0.013 seconds, 1.494 kilobytes]
-▶ ended pipeline [0.216 seconds]
++ penguins_data_raw_file dispatched
+✔ penguins_data_raw_file completed [1ms, 53.10 kB]
++ penguins_data_raw dispatched
+✔ penguins_data_raw completed [220ms, 10.40 kB]
++ penguins_data dispatched
+✔ penguins_data completed [14ms, 1.49 kB]
+✔ ended pipeline [390ms, 3 completed, 0 skipped]
 ```
 
 ::::::::::::::::::::::::::::::::::
@@ -268,15 +267,15 @@ tar_plan(
 
 
 ``` output
-▶ dispatched target hello_file
-● completed target hello_file [0 seconds, 26 bytes]
-▶ dispatched target hello
-● completed target hello [0.001 seconds, 77 bytes]
-▶ dispatched target hello_caps
-● completed target hello_caps [0.003 seconds, 77 bytes]
-▶ dispatched target hello_caps_out
-● completed target hello_caps_out [0.001 seconds, 26 bytes]
-▶ ended pipeline [0.119 seconds]
++ hello_file dispatched
+✔ hello_file completed [1ms, 26 B]
++ hello dispatched
+✔ hello completed [0ms, 77 B]
++ hello_caps dispatched
+✔ hello_caps completed [0ms, 77 B]
++ hello_caps_out dispatched
+✔ hello_caps_out completed [0ms, 26 B]
+✔ ended pipeline [171ms, 4 completed, 0 skipped]
 ```
 
 Take a look at `hello_caps.txt` in the `results` folder and verify it is as you expect.

functions.md

@@ -266,10 +266,9 @@ The following objects are masked from ‘package:datasets’:
 
     penguins, penguins_raw
 
-✔ skipping targets (1 so far)...
-▶ dispatched target penguins_data
-● completed target penguins_data [0.008 seconds, 1.612 kilobytes]
-▶ ended pipeline [0.101 seconds]
++ penguins_data dispatched
+✔ penguins_data completed [6ms, 1.61 kB]
+✔ ended pipeline [98ms, 1 completed, 2 skipped]
 ```
 
 We will learn more soon about the messages that `targets()` prints out.

lifecycle.md

@@ -55,8 +55,7 @@ The following objects are masked from ‘package:datasets’:
 
     penguins, penguins_raw
 
-✔ skipping targets (1 so far)...
-✔ skipped pipeline [0.075 seconds]
+✔ skipped pipeline [57ms, 3 skipped]
 ```
 
 Remember how the first time we ran the pipeline, `targets` printed out a list of each target as it was being built?
@@ -113,10 +112,9 @@ The following objects are masked from ‘package:datasets’:
 
     penguins, penguins_raw
 
-✔ skipping targets (1 so far)...
-▶ dispatched target penguins_data
-● completed target penguins_data [0.022 seconds, 1.494 kilobytes]
-▶ ended pipeline [0.124 seconds]
++ penguins_data dispatched
+✔ penguins_data completed [19ms, 1.49 kB]
+✔ ended pipeline [121ms, 1 completed, 2 skipped]
 ```
 
 What happened?
@@ -294,8 +292,7 @@ The following objects are masked from ‘package:datasets’:
 
     penguins, penguins_raw
 
-✔ skipping targets (1 so far)...
-✔ skipped pipeline [0.081 seconds]
+✔ skipped pipeline [73ms, 3 skipped]
 ```
 
 Let's invalidate `penguins_data` and run it again:
@@ -314,10 +311,9 @@ The following objects are masked from ‘package:datasets’:
 
     penguins, penguins_raw
 
-✔ skipping targets (1 so far)...
-▶ dispatched target penguins_data
-● completed target penguins_data [0.022 seconds, 1.494 kilobytes]
-▶ ended pipeline [0.124 seconds]
++ penguins_data dispatched
+✔ penguins_data completed [18ms, 1.49 kB]
+✔ ended pipeline [121ms, 1 completed, 2 skipped]
 ```
 
 If you want to reset **everything** and start fresh, you can use `tar_invalidate(everything())` (`tar_invalidate()` [accepts `tidyselect` expressions](https://docs.ropensci.org/targets/reference/tar_invalidate.html) to specify target names).

md5sum.txt

@@ -19,4 +19,4 @@
 "learners/reference.md" "3f06251c1f932e767ae8f22db25eb5a2" "site/built/reference.md" "2025-05-06"
 "learners/setup.md" "2c9965f182c4d73141cbf0bef2990f16" "site/built/setup.md" "2025-05-06"
 "profiles/learner-profiles.md" "44d8b9d8aca7963e6577e8c67d23eac0" "site/built/learner-profiles.md" "2025-05-06"
-"renv/profiles/lesson-requirements/renv.lock" "6f04824cc2b957b9ff427dd45da94e9d" "site/built/renv.lock" "2025-05-06"
+"renv/profiles/lesson-requirements/renv.lock" "f94a39ea98c936602f9373c1972a231f" "site/built/renv.lock" "2025-05-06"

organization.md

@@ -145,75 +145,11 @@ tar_plan(
 ```
 
 
-``` output
-
-```
-
-``` output
-── Debugging ───────────────────────────────────────────────────────────────────
-```
-
-``` output
-
-```
-
-``` output
-── How to ──────────────────────────────────────────────────────────────────────
-```
-
-``` output
-
-```
-
-``` output
-── Last error message ──────────────────────────────────────────────────────────
-```
-
-``` output
-
-```
-
-``` output
-── Last error traceback ────────────────────────────────────────────────────────
-```
-
 ``` error
 Error:
-! targets::tar_make() error
-    • tar_errored()
-    • tar_meta(fields = any_of("error"), complete_only = TRUE)
-    • tar_workspace()
-    • tar_workspaces()
-    • Debug: https://books.ropensci.org/targets/debugging.html
-    • Help: https://books.ropensci.org/targets/help.html
-    duplicated target names: height
-    base::tryCatch(base::withCallingHandlers({ NULL base::saveRDS(base::do.c...
-    tryCatchList(expr, classes, parentenv, handlers)
-    tryCatchOne(tryCatchList(expr, names[-nh], parentenv, handlers[-nh]), na...
-    doTryCatch(return(expr), name, parentenv, handler)
-    tryCatchList(expr, names[-nh], parentenv, handlers[-nh])
-    tryCatchOne(expr, names, parentenv, handlers[[1L]])
-    doTryCatch(return(expr), name, parentenv, handler)
-    base::withCallingHandlers({ NULL base::saveRDS(base::do.call(base::do.ca...
-    base::saveRDS(base::do.call(base::do.call, base::c(base::readRDS("/tmp/R...
-    base::do.call(base::do.call, base::c(base::readRDS("/tmp/RtmpOo8uMI/call...
-    (function (what, args, quote = FALSE, envir = parent.frame()) { if (!is....
-    (function (targets_function, targets_arguments, options, envir = NULL, s...
-    tryCatch(out <- withCallingHandlers(targets::tar_callr_inner_try(targets...
-    tryCatchList(expr, classes, parentenv, handlers)
-    tryCatchOne(expr, names, parentenv, handlers[[1L]])
-    doTryCatch(return(expr), name, parentenv, handler)
-    withCallingHandlers(targets::tar_callr_inner_try(targets_function = targ...
-    targets::tar_callr_inner_try(targets_function = targets_function, target...
-    pipeline_from_list(targets)
-    pipeline_from_list.default(targets)
-    pipeline_init(out)
-    pipeline_targets_init(targets, clone_targets)
-    tar_assert_unique_targets(names)
-    tar_throw_validate(message)
-    tar_error(message = paste0(...), class = c("tar_condition_validate", "ta...
-    rlang::abort(message = message, class = class, call = tar_envir_base)
-    signal_abort(cnd, .file)
+! Error in tar_make():
+  duplicated target names: height
+  See https://books.ropensci.org/targets/debugging.html
 ```
 
 **A major part of working with `targets` pipelines is writing custom functions that are the right size.**