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JHL-452b opened this issue Jan 23, 2025 · 2 comments
Open

Adding new annotation from ModelSeed #968

JHL-452b opened this issue Jan 23, 2025 · 2 comments

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@JHL-452b
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JHL-452b commented Jan 23, 2025

Current behavior:

Considering that MEMOTE includes reaction and metabolite annotations from ModelSEED as part of its scoring, I have generated a list of matching reactions and metabolites between Human-GEM and ModelSEED based on the SMILES information of the metabolites.

A total of 4,391 metabolites and 2,680 reactions were successfully matched. The addition of these annotation details will enhance the score of Human-GEM in MEMOTE.

You can find more details in this All_Seed_mapping_mets.xlsx and All_Seed_mapping_rxns.xlsx.

@mihai-sysbio
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I believe the annotation should end up in the corresponding TSV files.

@feiranl
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feiranl commented Mar 21, 2025

Thanks Mihail! Totally agree! Please proceed @JHL-452b by expanding the corresponding tsv files

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