@@ -731,16 +731,16 @@ def test_generate_clean_samplesheet(self):
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Experiment Name,CIDXX
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Investigator Name,Test
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[Data]
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- Lane,SampleID,SampleName,SamplePlate,SampleWell ,index,index2,Project,Description
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+ Lane,Sample_ID,Sample_Name,Sample_Plate,Sample_Well ,index,index2,Project,Description
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1,Sample_P10000_1001,P10000_1001,CIDXX,1:1,AACCGTAA,,A_Test_18_01,
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- 1,Sample_P10000_1001,P10000_1001,CIDXX,1:1,CTAAACGG,,A_Test_18_01,
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1,Sample_P10000_1001,P10000_1001,CIDXX,1:1,GGTTTACT,,A_Test_18_01,
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+ 1,Sample_P10000_1001,P10000_1001,CIDXX,1:1,CTAAACGG,,A_Test_18_01,
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1,Sample_P10000_1001,P10000_1001,CIDXX,1:1,TCGGCGTC,,A_Test_18_01,
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2,Sample_P10000_1005,P10000_1005,CIDXX,2:1,AGGTACC,,A_Test_18_01,
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+ 3,Sample_P10000_1006,P10000_1006,CIDXX,3:1,TGTATCCGAA,CACAGGTGAA,A_Test_18_01,
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3,Sample_P10000_1006,P10000_1006,CIDXX,3:1,GAGCGCCTAT,TTGGTACGCG,A_Test_18_01,
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- 3,Sample_P10000_1006,P10000_1006,CIDXX,3:1,GCTAGGTCAA,CACAGGTGAA,A_Test_18_01,
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3,Sample_P10000_1006,P10000_1006,CIDXX,3:1,TAAGACGGTG,TTGGTACGCG,A_Test_18_01,
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- 3,Sample_P10000_1006,P10000_1006,CIDXX,3:1,TGTATCCGAA ,CACAGGTGAA,A_Test_18_01,
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+ 3,Sample_P10000_1006,P10000_1006,CIDXX,3:1,GCTAGGTCAA ,CACAGGTGAA,A_Test_18_01,
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4,Sample_P10000_1007,P10000_1007,CIDXX,4:1,GTAACATGCG,AGTGTTACCT,A_Test_18_01,
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'''
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got_samplesheet = _generate_clean_samplesheet (ssparser , indexfile , rename_samples = True , rename_qPCR_suffix = True , fields_qPCR = [ssparser .dfield_snm ])
@@ -893,7 +893,7 @@ def test_generate_samplesheet_subset(self):
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Experiment Name,CIDXX
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Investigator Name,Test
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[Data]
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- Lane,SampleID,SampleName,SamplePlate,SampleWell ,index,index2,Project,Description
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+ Lane,Sample_ID,Sample_Name,Sample_Plate,Sample_Well ,index,index2,Project,Description
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1,Sample_P10000_1001,P10000_1001,CIDXX,1:1,SI-GA-A1,,A_Test_18_01,
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'''
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self .assertEqual (got_data , expected_data )
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