Merge branch 'NCAR:main' into update_colors

Author: kafitzgerald

.github/workflows/ci.yml

@@ -8,47 +8,35 @@ on:
     - cron: '0 0 * * *' # Daily “At 00:00”
   workflow_dispatch:
 
+concurrency:
+  group: ${{ github.workflow }}-${{ github.ref }}
+  cancel-in-progress: true
+
 jobs:
   test:
     name: Python (${{ matrix.python-version }}, ${{ matrix.os }})
     runs-on: ${{ matrix.os }}
     defaults:
       run:
         shell: bash -l {0}
-
     strategy:
       fail-fast: false
       matrix:
-        os: [ "ubuntu-latest", "macos-latest", "macos-14", "windows-latest"]
-        python-version: [ "3.9", "3.11", "3.12" ]
+        os: [ "ubuntu-latest", "macos-latest", "windows-latest"]
+        python-version: [ "3.9", "3.10", "3.11", "3.12" ]
     steps:
-      - name: Cancel previous runs
-        uses: styfle/[email protected]
-        with:
-          access_token: ${{ github.token }}
       - name: checkout
         uses: actions/checkout@v4
-        with:
-          token: ${{ github.token }}
-      - name: conda_setup
-        uses: conda-incubator/setup-miniconda@v3
-        if: matrix.os != 'macos-14'
-        with:
-          activate-environment: geocat_viz_build
-          channel-priority: strict
-          python-version: ${{ matrix.python-version }}
-          channels: conda-forge
-          environment-file: build_envs/environment.yml
-      - name: conda_setup_m1
+
+      - name: environment setup
         uses: conda-incubator/setup-miniconda@v3
-        if: matrix.os == 'macos-14'
         with:
-          installer-url: https://github.com/conda-forge/miniforge/releases/download/23.11.0-0/Mambaforge-23.11.0-0-MacOSX-arm64.sh
           activate-environment: geocat_viz_build
           channel-priority: strict
           python-version: ${{ matrix.python-version }}
           channels: conda-forge
           environment-file: build_envs/environment.yml
+
       - name: Install geocat-viz
         run: |
           python -m pip install . --no-deps
@@ -57,6 +45,10 @@ jobs:
         run: |
           conda list
 
+      - name: tests
+        run: |
+          python -m pytest
+
   link-check:
     runs-on: ubuntu-latest
     defaults:
@@ -65,22 +57,24 @@ jobs:
     steps:
       - name: checkout
         uses: actions/checkout@v4
-        with:
-          token: ${{ github.token }}
-      - name: conda_setup
+
+      - name: environment setup
         uses: conda-incubator/setup-miniconda@v3
         with:
           activate-environment: gv-docs
           channel-priority: strict
           python-version: 3.9
           channels: conda-forge
           environment-file: build_envs/docs.yml
+
       - name: Install geocat-viz
         run: |
           python -m pip install .
+
       - name: check conda list
         run: |
           conda list
+
       - name: Make docs with linkcheck
         run: |
           cd docs

.github/workflows/pre-commit.yml

@@ -49,7 +49,7 @@ jobs:
           python -m twine check dist/*
 
       - name: Publish package to PyPI
-        uses: pypa/gh-action-pypi-publish@v1.8.11
+        uses: pypa/gh-action-pypi-publish@v1.10.3
         with:
           skip-existing: true
           verbose: true

.github/workflows/pypi.yaml

@@ -11,3 +11,6 @@ docs/_build/
 dist/
 .eggs/
 *egg-info
+
+# IDEs
+settings.json

.gitignore

@@ -1,22 +1,28 @@
 repos:
--   repo: https://github.com/pre-commit/mirrors-yapf    # To format the code to conform YAPF
-    rev: v0.31.0
+-   repo: https://github.com/google/yapf    # To format the code to conform YAPF
+    rev: v0.40.2
     hooks:
       - id: yapf
         args: ['--in-place', '--recursive', '--style', 'google']
+        require_serial: true
 
--   repo: https://github.com/myint/docformatter    # To format the doc strings to conform PEP257
-    rev: v1.4
+-   repo: https://github.com/PyCQA/docformatter    # To format the doc strings to conform PEP257
+    rev: v1.7.5
     hooks:
     - id: docformatter
       args: [--in-place]
 
 -   repo: https://github.com/pre-commit/pre-commit-hooks    # Some common pre-commit hooks
-    rev: v3.4.0
+    rev: v4.6.0
     hooks:
     - id: check-yaml               # Checks the syntax of .yaml files.
       args: [--allow-multiple-documents]
       exclude: 'meta.yaml'    # Exclude this because it gives an error for '%' in Line 1 and couldn't fix yet
     - id: end-of-file-fixer        # Makes sure files end with a newline.
     - id: trailing-whitespace      # Checks for any tabs or spaces after the last non-whitespace character on the line.
     - id: check-docstring-first    # Checks that code comes after the docstrings.
+    - id: check-yaml               # Check valid yml file
+
+ci:
+    autofix_prs: false
+    autoupdate_schedule: monthly

.pre-commit-config.yaml

@@ -0,0 +1,18 @@
+include LICENSE
+include README.md
+
+recursive-include geocat *.py
+recursive-exclude * __pycache__
+recursive-exclude * *.py[co]
+exclude .gitignore
+exclude .pre-commit-config.yaml
+exclude .readthedocs.yml
+
+include *.md
+include *.toml
+include *.yaml
+include *.txt
+prune test*
+prune .github*
+prune docs*
+prune build_envs*

MANIFEST.in

@@ -1,13 +1,14 @@
 
 # GeoCAT-viz
 
-The GeoCAT-viz repo contains tools to help plot data, including convenience and plotting functions that are used
-to facilitate plotting geosciences data with Matplotlib, Cartopy, and possibly other Python ecosystem
-plotting packages. GeoCAT-viz functionality is used by
-[GeoCAT-examples](https://github.com/NCAR/geocat-examples) and is of possible use for other GeoCAT components.
+GeoCAT-viz contains tools to help plot geoscience data, including convenience and plotting functions that are
+used to facilitate plotting geosciences data with Matplotlib, Cartopy, and other visualization packages.
+GeoCAT-viz functionality is used by
+[GeoCAT-examples](https://github.com/NCAR/geocat-examples).
 
-|         **Docs**         |                  [![Documentation Status][rtd-badge]][rtd-link]                  |
+|          **CI**          |           [![GitHub Workflow Status][github-ci-badge]][github-ci-link]           |
 |:------------------------:|:--------------------------------------------------------------------------------:|
+|         **Docs**         |                  [![Documentation Status][rtd-badge]][rtd-link]                  |
 |       **Package**        |       [![Conda][conda-badge]][conda-link] [![PyPI][pypi-badge]][pypi-link]       |
 |       **License**        |                 [![License][license-badge]][license-badge-link]                  |
 |         **DOI**          |                          [![DOI][doi-badge]][doi-link]                           |
@@ -31,6 +32,8 @@ https://geocat-viz.readthedocs.io/en/latest/citation.html) page.
 
 [comment]: <> (reference links used for badges.)
 
+[github-ci-badge]: https://img.shields.io/github/actions/workflow/status/NCAR/geocat-viz/ci.yml?branch=main&label=CI&style=for-the-badge
+[github-ci-link]: https://github.com/NCAR/geocat-viz/actions/workflows/ci.yml
 [rtd-badge]: https://img.shields.io/readthedocs/geocat-viz/latest.svg?style=for-the-badge
 [rtd-link]: https://geocat-viz.readthedocs.io/en/latest/?badge=latest
 [pypi-badge]: https://img.shields.io/pypi/v/geocat-viz?logo=pypix&style=for-the-badge

README.md

@@ -7,13 +7,13 @@ dependencies:
   - make
   - matplotlib
   - sphinx
-  - pip
   - cmaps
   - numpy
   - xarray
   - metpy
   - pint
+  - pytest
+  - pytest-mpl
   - geocat-datafiles
-  - pip:
-    - pre-commit
-    - scikit-learn
+  - pre-commit
+  - scikit-learn

build_envs/environment.yml

@@ -369,6 +369,9 @@ def update_gallery(app: Sphinx):
 # generate warning for all invalid links
 #nitpicky = True
 
+# add links to ignore during link checking
+linkcheck_ignore = [r'https://stackoverflow.com/*']
+
 
 # Allow for changes to be made to the css in the theme_overrides file
 def setup(app):

docs/conf.py

@@ -57,7 +57,7 @@
     "\n",
     "# Draw diagonal dashed lines from origin to correlation values\n",
     "# Also enforces proper X-Y ratio\n",
-    "taylor.add_xgrid(np.array([0.6, 0.9]))\n",
+    "taylor.add_corr_grid(np.array([0.6, 0.9]))\n",
     "\n",
     "# Add models to Taylor diagram\n",
     "taylor.add_model_set(a_sdev,\n",

docs/examples/taylor.ipynb

@@ -5,8 +5,39 @@
 Release Notes
 =============
 
-v2024.03.0 (Unreleased)
------------------------
+v2024.xx.0 (unreleased)
+---------------------------
+
+Internal Changes
+^^^^^^^^^^^^^^^^
+* Update pre-commit versions and configuration by `Katelyn FitzGerald`_ in (:pr:`247`)
+* Remove M1 workaround for CI and tokens that are no longer needed by `Katelyn FitzGerald`_ in (:pr:`232`)
+
+Testing
+^^^^^^^
+* Add basic testing infrastructure by `Katelyn FitzGerald`_ and `Julia Kent`_ in (:pr:`233`)
+* Add tests for `viz.taylor` by `Julia Kent`_ in (:pr:`234`)
+* Add tests for `viz.util` by `Julia Kent`_ in (:pr:`239`)
+* Remove now duplicative macOS runner from CI and add back in Python 3.10 by `Katelyn FitzGerald`_ in (:pr:`240`)
+
+
+v2024.03.0 (March 26, 2024)
+---------------------------
+This release deprecates ``TaylorDiagram`` method names ``add_xgrid()`` and
+``add_ygrid()`` in favor of the more descriptive ``add_corr_grid()`` and ``add_std_grid()``.
+
+Documentation
+^^^^^^^^^^^^^
+* Document known issue with `suptitle` argument of  ``set_titles_and_labels`` and Cartopy plots by `Julia Kent`_ in (:pr:`219`)
+
+Deprecations
+^^^^^^^^^^
+* Pending deprecation warnings added for ``TaylorDiagram`` methods ``add_xgrid`` and ``add_ygrid`` which are changing to the new ``add_corr_grid`` and ``add_std_grid`` by `Julia Kent`_ in (:pr:`219`)
+
+
+v2024.02.1 (February 28, 2024)
+------------------------------
+This release changes to implicit namespace packaging and addresses a bug in the Taylor diagram functionality when disabling ``annotate_on``.
 
 Bug Fixes
 ^^^^^^^^^
@@ -15,6 +46,8 @@ Bug Fixes
 Internal Changes
 ^^^^^^^^^^^^^^^^
 * Switch to PyPI Trusted Publishing by `Orhan Eroglu`_ in (:pr:`208`)
+* Add ``linkcheck_ignore`` to ``docs/conf.py`` to address erroneous failures and add CI badge to README by `Katelyn FitzGerald`_ in (:pr:`218`)
+* Convert to implicit namespace packaging set up by `Anissa Zacharias`_ in (:pr:`220`)
 
 v2024.02.0 (February 6, 2024)
 -----------------------------
@@ -122,3 +155,4 @@ Documentation
 .. _`Katelyn Fitzgerald`: https://github.com/kafitzgerald
 .. _`Simon Rosanka`: https://github.com/srosanka
 .. _`Orhan Eroglu`: https://github.com/erogluorhan
+.. _`Anissa Zacharias`: https://github.com/anissa111

docs/release-notes.rst

@@ -29,9 +29,7 @@ include_package_data = True
 python_requires = >=3.9, <3.13
 package_dir =
     =src
-packages =
-    geocat
-    geocat.viz
+packages = find_namespace:
 setup_requires =
     setuptools_scm
     setuptools
@@ -45,6 +43,12 @@ install_requires =
     setuptools
     scikit-learn
     metpy
+tests_require =
+    pytest
+    pytest-mpl
+
+[options.packages.find]
+where = src
 
 [options.extras_require]
 docs =
@@ -63,7 +67,7 @@ docs =
 
 [tool:pytest]
 python_files = test_*.py
-testpaths = test
+testpaths = tests
 
 [aliases]
 test = pytest