Releases: Molmed/checkQC
Add support for Nano and Micro MiSeqs
New feature:
- Added support for Nano and Micro Miseq flowcells that produces less data than a regular flowcell. CheckQC can now detect those types of runs and QC criteria for those types have been added to the config.
Use PyYAML's safe_load instead of load
Patch changes:
- Use PyYAML's safe_load instead of load (#101)
Clearer QC messages
Patch changes:
- Fixed travis integration issue
- Updated QC messages in unidentified index handler to be clearer about which index it is referring to
v1.5 reagents adjustements to NovaSeq
Patch changes:
- Minor adjustments of NovaSeq QC thresholds to account for the v1.5 reagents.
Default config update and fixing docs (with bumped version number)
New release since version number never was incremented in the last one
Patch updates:
- Bioconda information added to README
- Docs building fixes
- Updated some QC thresholds in the default config
Default config update and fixing docs
Patch updates:
- Bioconda information added to README
- Docs building fixes
- Updated some QC thresholds in the default config
Update interop requirement
Patch release:
- Fixed problem where NovaSeq SP couldn't be run #88
New feature: Use closest read length
It is possible to instruct CheckQC to use the closest read length if the read length of the run is not found in the config. In case of a tie between two read lengths, the longer read length (with stricter QC criteria) will be used.
Usage:
$ checkqc --use-closest-read-length <RUNFOLDER>
This parameter can be supplied to the webservice as a query argument:
curl -s -w'\n' localhost:9999/qc/170726_D00118_0303_BCB1TVANXX?useClosestReadLength | python -m json.tool
New feature: Downgrade errors
It is now possible to downgrade errors to warnings for specific handlers. Prior to evaluating the QC criteria, the config will be updated so that warning threshold = error threshold and error threshold = unknown. Read more about usage in the docs.
New feature: Index white-list
It is now possible to specify white-list indexes that only cause warnings even if they occur above the significance level.