Merge pull request #96 from alvaannett/BIO-2145_update_Q30_novaseq

Bio 2145 update q30 novaseq

Author: matrulda

checkQC/default_config/config.yaml

@@ -142,7 +142,7 @@ novaseq_SP:
         warning: 325
         error: unknown
       - name: Q30Handler
-        warning: 85
+        warning: 90
         error: unknown
       - name: ErrorRateHandler
         allow_missing_error_rate: False
@@ -157,7 +157,7 @@ novaseq_SP:
         warning: 325
         error: unknown
       - name: Q30Handler
-        warning: 80
+        warning: 85
         error: unknown
       - name: ErrorRateHandler
         allow_missing_error_rate: False
@@ -167,6 +167,21 @@ novaseq_SP:
         warning: unknown
         error: 243.75
   151:
+    handlers:
+      - name: ClusterPFHandler
+        warning: 325
+        error: unknown
+      - name: Q30Handler
+        warning: 85
+        error: unknown
+      - name: ErrorRateHandler
+        allow_missing_error_rate: False
+        warning: 5
+        error: unknown
+      - name: ReadsPerSampleHandler
+        warning: unknown
+        error: 243.75
+  251:
     handlers:
       - name: ClusterPFHandler
         warning: 325
@@ -189,7 +204,7 @@ novaseq_S1:
         warning: 650
         error: unknown
       - name: Q30Handler
-        warning: 85
+        warning: 90
         error: unknown
       - name: ErrorRateHandler
         allow_missing_error_rate: False
@@ -204,7 +219,7 @@ novaseq_S1:
         warning: 650
         error: unknown
       - name: Q30Handler
-        warning: 80
+        warning: 85
         error: unknown
       - name: ErrorRateHandler
         allow_missing_error_rate: False
@@ -219,7 +234,7 @@ novaseq_S1:
         warning: 650
         error: unknown
       - name: Q30Handler
-        warning: 75
+        warning: 85
         error: unknown
       - name: ErrorRateHandler
         allow_missing_error_rate: False
@@ -236,7 +251,7 @@ novaseq_S2:
         warning: 1650
         error: unknown
       - name: Q30Handler
-        warning: 85
+        warning: 90
         error: unknown
       - name: ErrorRateHandler
         allow_missing_error_rate: False
@@ -251,7 +266,7 @@ novaseq_S2:
         warning: 1650
         error: unknown
       - name: Q30Handler
-        warning: 80
+        warning: 85
         error: unknown
       - name: ErrorRateHandler
         allow_missing_error_rate: False
@@ -266,7 +281,7 @@ novaseq_S2:
         warning: 1650
         error: unknown
       - name: Q30Handler
-        warning: 75
+        warning: 85
         error: unknown
       - name: ErrorRateHandler
         allow_missing_error_rate: False
@@ -283,7 +298,7 @@ novaseq_S4:
         warning: 2000
         error: unknown
       - name: Q30Handler
-        warning: 80
+        warning: 85
         error: unknown
       - name: ErrorRateHandler
         allow_missing_error_rate: False
@@ -298,7 +313,7 @@ novaseq_S4:
         warning: 2000
         error: unknown
       - name: Q30Handler
-        warning: 75
+        warning: 85
         error: unknown
       - name: ErrorRateHandler
         allow_missing_error_rate: False