Skip to content

Commit a941fe1

Browse files
mihai-sysbiogithub-actions[bot]
mihai-sysbio
authored and
github-actions[bot]
committed
update validation results for SysBioChalmers/Human-GEM
1 parent 2f1f3e5 commit a941fe1

File tree

1 file changed

+9
-258
lines changed

1 file changed

+9
-258
lines changed

‎results/SysBioChalmers_Human-GEM.json

Lines changed: 9 additions & 258 deletions
Original file line numberDiff line numberDiff line change
@@ -4,275 +4,26 @@
44
"v1.14.0": {
55
"standard-GEM": [
66
{
7-
"0.4": true
7+
"0.5": true
88
},
99
{
1010
"test_results": {
11-
"cobrapy-load": {
11+
"cobrapy-load-json": {
1212
"0.26.2": false,
13-
"errors": "\"Error -3 while decompressing data: incorrect header check\""
14-
},
15-
"cobrapy-validate-sbml": {
16-
"0.26.2": false,
17-
"errors": "\"{'SBML_FATAL': [], 'SBML_ERROR': [], 'SBML_SCHEMA_ERROR': [], 'SBML_WARNING': ['E0 (Warning): General SBML conformance (core, L3); RDF does not contain valid ModelHistory; LibSBML expected to read the annotation into a ModelHistory object. Unfortunately, some attributes were not present or correct and the resulting ModelHistory object will not correctly produce the annotation. This functionality will be improved in later versions of libSBML. \\\\nReference: L3V1 Section 6.3\\\\n An invalid ModelHistory element has been stored.\\\\n', 'E1 (Warning): General SBML conformance (core, L3); RDF does not contain valid ModelHistory; LibSBML expected to read the annotation into a ModelHistory object. Unfortunately, some attributes were not present or correct and the resulting ModelHistory object will not correctly produce the annotation. This functionality will be improved in later versions of libSBML. \\\\nReference: L3V1 Section 6.3\\\\n An invalid ModelHistory element has been stored.\\\\n'], 'COBRA_FATAL': [], 'COBRA_ERROR': [], 'COBRA_WARNING': [], 'COBRA_CHECK': []}\""
18-
},
19-
"memote-score": {
20-
"0.13.0": 0.0,
21-
"errors": ""
22-
},
23-
"yamllint": {
24-
"1.29.0": "True",
25-
"errors": []
26-
}
27-
}
28-
}
29-
]
30-
}
31-
},
32-
{
33-
"v1.13.0": {
34-
"standard-GEM": [
35-
{
36-
"0.4": true
37-
},
38-
{
39-
"test_results": {
40-
"cobrapy-load": {
41-
"0.26.2": false,
42-
"errors": "\"Error -3 while decompressing data: incorrect header check\""
43-
},
44-
"cobrapy-validate-sbml": {
45-
"0.26.2": false,
46-
"errors": "\"{'SBML_FATAL': [], 'SBML_ERROR': [], 'SBML_SCHEMA_ERROR': [], 'SBML_WARNING': ['E0 (Warning): General SBML conformance (core, L3); RDF does not contain valid ModelHistory; LibSBML expected to read the annotation into a ModelHistory object. Unfortunately, some attributes were not present or correct and the resulting ModelHistory object will not correctly produce the annotation. This functionality will be improved in later versions of libSBML. \\\\nReference: L3V1 Section 6.3\\\\n An invalid ModelHistory element has been stored.\\\\n', 'E1 (Warning): General SBML conformance (core, L3); RDF does not contain valid ModelHistory; LibSBML expected to read the annotation into a ModelHistory object. Unfortunately, some attributes were not present or correct and the resulting ModelHistory object will not correctly produce the annotation. This functionality will be improved in later versions of libSBML. \\\\nReference: L3V1 Section 6.3\\\\n An invalid ModelHistory element has been stored.\\\\n'], 'COBRA_FATAL': [], 'COBRA_ERROR': [], 'COBRA_WARNING': [], 'COBRA_CHECK': []}\""
47-
},
48-
"memote-score": {
49-
"0.13.0": 0.0,
50-
"errors": ""
51-
},
52-
"yamllint": {
53-
"1.29.0": "True",
54-
"errors": []
55-
}
56-
}
57-
}
58-
]
59-
}
60-
},
61-
{
62-
"v1.12.0": {
63-
"standard-GEM": [
64-
{
65-
"0.4": true
66-
},
67-
{
68-
"test_results": {
69-
"cobrapy-load": {
70-
"0.26.2": false,
71-
"errors": "\"Error -3 while decompressing data: incorrect header check\""
72-
},
73-
"cobrapy-validate-sbml": {
74-
"0.26.2": false,
75-
"errors": "\"{'SBML_FATAL': [], 'SBML_ERROR': [], 'SBML_SCHEMA_ERROR': [], 'SBML_WARNING': ['E0 (Warning): General SBML conformance (core, L3); RDF does not contain valid ModelHistory; LibSBML expected to read the annotation into a ModelHistory object. Unfortunately, some attributes were not present or correct and the resulting ModelHistory object will not correctly produce the annotation. This functionality will be improved in later versions of libSBML. \\\\nReference: L3V1 Section 6.3\\\\n An invalid ModelHistory element has been stored.\\\\n', 'E1 (Warning): General SBML conformance (core, L3); RDF does not contain valid ModelHistory; LibSBML expected to read the annotation into a ModelHistory object. Unfortunately, some attributes were not present or correct and the resulting ModelHistory object will not correctly produce the annotation. This functionality will be improved in later versions of libSBML. \\\\nReference: L3V1 Section 6.3\\\\n An invalid ModelHistory element has been stored.\\\\n'], 'COBRA_FATAL': [], 'COBRA_ERROR': [], 'COBRA_WARNING': [], 'COBRA_CHECK': []}\""
76-
},
77-
"memote-score": {
78-
"0.13.0": 0.0,
79-
"errors": ""
80-
},
81-
"yamllint": {
82-
"1.29.0": "True",
83-
"errors": []
84-
}
85-
}
86-
}
87-
]
88-
}
89-
},
90-
{
91-
"v1.11.0": {
92-
"standard-GEM": [
93-
{
94-
"0.4": true
95-
},
96-
{
97-
"test_results": {
98-
"cobrapy-load": {
99-
"0.26.2": false,
100-
"errors": "\"Error -3 while decompressing data: incorrect header check\""
101-
},
102-
"cobrapy-validate-sbml": {
103-
"0.26.2": false,
104-
"errors": "\"{'SBML_FATAL': [], 'SBML_ERROR': [], 'SBML_SCHEMA_ERROR': [], 'SBML_WARNING': ['E0 (Warning): General SBML conformance (core, L3); RDF does not contain valid ModelHistory; LibSBML expected to read the annotation into a ModelHistory object. Unfortunately, some attributes were not present or correct and the resulting ModelHistory object will not correctly produce the annotation. This functionality will be improved in later versions of libSBML. \\\\nReference: L3V1 Section 6.3\\\\n An invalid ModelHistory element has been stored.\\\\n', 'E1 (Warning): General SBML conformance (core, L3); RDF does not contain valid ModelHistory; LibSBML expected to read the annotation into a ModelHistory object. Unfortunately, some attributes were not present or correct and the resulting ModelHistory object will not correctly produce the annotation. This functionality will be improved in later versions of libSBML. \\\\nReference: L3V1 Section 6.3\\\\n An invalid ModelHistory element has been stored.\\\\n'], 'COBRA_FATAL': [], 'COBRA_ERROR': [], 'COBRA_WARNING': [], 'COBRA_CHECK': []}\""
105-
},
106-
"memote-score": {
107-
"0.13.0": 0.0,
108-
"errors": ""
109-
},
110-
"yamllint": {
111-
"1.29.0": "True",
112-
"errors": []
113-
}
114-
}
115-
}
116-
]
117-
}
118-
},
119-
{
120-
"v1.10.0": {
121-
"standard-GEM": [
122-
{
123-
"0.4": true
124-
},
125-
{
126-
"test_results": {
127-
"cobrapy-load": {
128-
"0.26.2": false,
129-
"errors": "\"Error -3 while decompressing data: incorrect header check\""
130-
},
131-
"cobrapy-validate-sbml": {
132-
"0.26.2": false,
133-
"errors": "\"{'SBML_FATAL': [], 'SBML_ERROR': [], 'SBML_SCHEMA_ERROR': [], 'SBML_WARNING': ['E0 (Warning): General SBML conformance (core, L3); RDF does not contain valid ModelHistory; LibSBML expected to read the annotation into a ModelHistory object. Unfortunately, some attributes were not present or correct and the resulting ModelHistory object will not correctly produce the annotation. This functionality will be improved in later versions of libSBML. \\\\nReference: L3V1 Section 6.3\\\\n An invalid ModelHistory element has been stored.\\\\n', 'E1 (Warning): General SBML conformance (core, L3); RDF does not contain valid ModelHistory; LibSBML expected to read the annotation into a ModelHistory object. Unfortunately, some attributes were not present or correct and the resulting ModelHistory object will not correctly produce the annotation. This functionality will be improved in later versions of libSBML. \\\\nReference: L3V1 Section 6.3\\\\n An invalid ModelHistory element has been stored.\\\\n'], 'COBRA_FATAL': [], 'COBRA_ERROR': [], 'COBRA_WARNING': [], 'COBRA_CHECK': []}\""
134-
},
135-
"memote-score": {
136-
"0.13.0": 0.0,
137-
"errors": ""
13+
"errors": "\"Extra data: line 1 column 4 (char 3)\""
13814
},
139-
"yamllint": {
140-
"1.29.0": "True",
141-
"errors": []
142-
}
143-
}
144-
}
145-
]
146-
}
147-
},
148-
{
149-
"v1.9.0": {
150-
"standard-GEM": [
151-
{
152-
"0.4": true
153-
},
154-
{
155-
"test_results": {
156-
"cobrapy-load": {
15+
"cobrapy-load-matlab": {
15716
"0.26.2": false,
15817
"errors": "\"Error -3 while decompressing data: incorrect header check\""
15918
},
160-
"cobrapy-validate-sbml": {
161-
"0.26.2": false,
162-
"errors": "\"{'SBML_FATAL': [], 'SBML_ERROR': [], 'SBML_SCHEMA_ERROR': [], 'SBML_WARNING': ['E0 (Warning): General SBML conformance (core, L3); RDF does not contain valid ModelHistory; LibSBML expected to read the annotation into a ModelHistory object. Unfortunately, some attributes were not present or correct and the resulting ModelHistory object will not correctly produce the annotation. This functionality will be improved in later versions of libSBML. \\\\nReference: L3V1 Section 6.3\\\\n An invalid ModelHistory element has been stored.\\\\n', 'E1 (Warning): General SBML conformance (core, L3); RDF does not contain valid ModelHistory; LibSBML expected to read the annotation into a ModelHistory object. Unfortunately, some attributes were not present or correct and the resulting ModelHistory object will not correctly produce the annotation. This functionality will be improved in later versions of libSBML. \\\\nReference: L3V1 Section 6.3\\\\n An invalid ModelHistory element has been stored.\\\\n'], 'COBRA_FATAL': [], 'COBRA_ERROR': [], 'COBRA_WARNING': [], 'COBRA_CHECK': []}\""
163-
},
164-
"memote-score": {
165-
"0.13.0": 0.0,
19+
"cobrapy-load-sbml": {
20+
"0.26.2": true,
16621
"errors": ""
16722
},
168-
"yamllint": {
169-
"1.29.0": "True",
170-
"errors": []
171-
}
172-
}
173-
}
174-
]
175-
}
176-
},
177-
{
178-
"v1.8.0": {
179-
"standard-GEM": [
180-
{
181-
"0.4": true
182-
},
183-
{
184-
"test_results": {
185-
"cobrapy-load": {
186-
"0.26.2": false,
187-
"errors": "\"Error -3 while decompressing data: incorrect header check\""
188-
},
189-
"cobrapy-validate-sbml": {
190-
"0.26.2": false,
191-
"errors": "\"{'SBML_FATAL': [], 'SBML_ERROR': [], 'SBML_SCHEMA_ERROR': [], 'SBML_WARNING': ['E0 (Warning): General SBML conformance (core, L3); RDF does not contain valid ModelHistory; LibSBML expected to read the annotation into a ModelHistory object. Unfortunately, some attributes were not present or correct and the resulting ModelHistory object will not correctly produce the annotation. This functionality will be improved in later versions of libSBML. \\\\nReference: L3V1 Section 6.3\\\\n An invalid ModelHistory element has been stored.\\\\n', 'E1 (Warning): General SBML conformance (core, L3); RDF does not contain valid ModelHistory; LibSBML expected to read the annotation into a ModelHistory object. Unfortunately, some attributes were not present or correct and the resulting ModelHistory object will not correctly produce the annotation. This functionality will be improved in later versions of libSBML. \\\\nReference: L3V1 Section 6.3\\\\n An invalid ModelHistory element has been stored.\\\\n'], 'COBRA_FATAL': [], 'COBRA_ERROR': [], 'COBRA_WARNING': [], 'COBRA_CHECK': []}\""
192-
},
193-
"memote-score": {
194-
"0.13.0": 0.0,
23+
"cobrapy-load-yaml": {
24+
"0.26.2": true,
19525
"errors": ""
19626
},
197-
"yamllint": {
198-
"1.29.0": "True",
199-
"errors": []
200-
}
201-
}
202-
}
203-
]
204-
}
205-
},
206-
{
207-
"v1.7.0": {
208-
"standard-GEM": [
209-
{
210-
"0.4": true
211-
},
212-
{
213-
"test_results": {
214-
"cobrapy-load": {
215-
"0.26.2": false,
216-
"errors": "\"Error -3 while decompressing data: incorrect header check\""
217-
},
218-
"cobrapy-validate-sbml": {
219-
"0.26.2": false,
220-
"errors": "\"{'SBML_FATAL': [], 'SBML_ERROR': [], 'SBML_SCHEMA_ERROR': [], 'SBML_WARNING': ['E0 (Warning): General SBML conformance (core, L3); RDF does not contain valid ModelHistory; LibSBML expected to read the annotation into a ModelHistory object. Unfortunately, some attributes were not present or correct and the resulting ModelHistory object will not correctly produce the annotation. This functionality will be improved in later versions of libSBML. \\\\nReference: L3V1 Section 6.3\\\\n An invalid ModelHistory element has been stored.\\\\n', 'E1 (Warning): General SBML conformance (core, L3); RDF does not contain valid ModelHistory; LibSBML expected to read the annotation into a ModelHistory object. Unfortunately, some attributes were not present or correct and the resulting ModelHistory object will not correctly produce the annotation. This functionality will be improved in later versions of libSBML. \\\\nReference: L3V1 Section 6.3\\\\n An invalid ModelHistory element has been stored.\\\\n'], 'COBRA_FATAL': [], 'COBRA_ERROR': [], 'COBRA_WARNING': [], 'COBRA_CHECK': []}\""
221-
},
222-
"memote-score": {
223-
"0.13.0": 0.0,
224-
"errors": ""
225-
},
226-
"yamllint": {
227-
"1.29.0": "True",
228-
"errors": []
229-
}
230-
}
231-
}
232-
]
233-
}
234-
},
235-
{
236-
"v1.6.0": {
237-
"standard-GEM": [
238-
{
239-
"0.4": true
240-
},
241-
{
242-
"test_results": {
243-
"cobrapy-load": {
244-
"0.26.2": false,
245-
"errors": "\"Error -3 while decompressing data: incorrect header check\""
246-
},
247-
"cobrapy-validate-sbml": {
248-
"0.26.2": false,
249-
"errors": "\"{'SBML_FATAL': [], 'SBML_ERROR': [], 'SBML_SCHEMA_ERROR': [], 'SBML_WARNING': ['E0 (Warning): General SBML conformance (core, L3); RDF does not contain valid ModelHistory; LibSBML expected to read the annotation into a ModelHistory object. Unfortunately, some attributes were not present or correct and the resulting ModelHistory object will not correctly produce the annotation. This functionality will be improved in later versions of libSBML. \\\\nReference: L3V1 Section 6.3\\\\n An invalid ModelHistory element has been stored.\\\\n', 'E1 (Warning): General SBML conformance (core, L3); RDF does not contain valid ModelHistory; LibSBML expected to read the annotation into a ModelHistory object. Unfortunately, some attributes were not present or correct and the resulting ModelHistory object will not correctly produce the annotation. This functionality will be improved in later versions of libSBML. \\\\nReference: L3V1 Section 6.3\\\\n An invalid ModelHistory element has been stored.\\\\n'], 'COBRA_FATAL': [], 'COBRA_ERROR': [], 'COBRA_WARNING': [], 'COBRA_CHECK': []}\""
250-
},
251-
"memote-score": {
252-
"0.13.0": 0.0,
253-
"errors": ""
254-
},
255-
"yamllint": {
256-
"1.29.0": "True",
257-
"errors": []
258-
}
259-
}
260-
}
261-
]
262-
}
263-
},
264-
{
265-
"v1.5.0": {
266-
"standard-GEM": [
267-
{
268-
"0.4": true
269-
},
270-
{
271-
"test_results": {
272-
"cobrapy-load": {
273-
"0.26.2": false,
274-
"errors": "\"Error -3 while decompressing data: incorrect header check\""
275-
},
27627
"cobrapy-validate-sbml": {
27728
"0.26.2": false,
27829
"errors": "\"{'SBML_FATAL': [], 'SBML_ERROR': [], 'SBML_SCHEMA_ERROR': [], 'SBML_WARNING': ['E0 (Warning): General SBML conformance (core, L3); RDF does not contain valid ModelHistory; LibSBML expected to read the annotation into a ModelHistory object. Unfortunately, some attributes were not present or correct and the resulting ModelHistory object will not correctly produce the annotation. This functionality will be improved in later versions of libSBML. \\\\nReference: L3V1 Section 6.3\\\\n An invalid ModelHistory element has been stored.\\\\n', 'E1 (Warning): General SBML conformance (core, L3); RDF does not contain valid ModelHistory; LibSBML expected to read the annotation into a ModelHistory object. Unfortunately, some attributes were not present or correct and the resulting ModelHistory object will not correctly produce the annotation. This functionality will be improved in later versions of libSBML. \\\\nReference: L3V1 Section 6.3\\\\n An invalid ModelHistory element has been stored.\\\\n'], 'COBRA_FATAL': [], 'COBRA_ERROR': [], 'COBRA_WARNING': [], 'COBRA_CHECK': []}\""
@@ -282,7 +33,7 @@
28233
"errors": ""
28334
},
28435
"yamllint": {
285-
"1.29.0": "True",
36+
"1.29.0": true,
28637
"errors": []
28738
}
28839
}

0 commit comments

Comments
 (0)