Clinvar vcf processing errors

[tkmamidi]

Describe the bug
I'm trying to run vcf downloaded from clinvar just to test how the normalization would handle and it is erroring out a lot of variants either by syntax error or by index.

To Reproduce
Steps to reproduce the behavior:

1. Download the latest clinvar vcf file
2. Run opencravat without any annotation, just the base module - oc run clinvar.vcf.gz -l hg38
3. Observe the command line errors popping up

Expected behavior
It should process all variants from the vcf with minimal errors.

Screenshots

I see one that should error out but the top one seems fine?

Desktop (please complete the following information):

• OS: iOS
• Using latest version of open-cravat