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ISA model

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Alejandra Gonzalez-Beltran edited this page Feb 25, 2016 · 3 revisions

For the ISA-API, we have represented the ISA model version 1.0 with a set of JSON schemas, which provide the information the ISA model maintains for each of the objects.

The core set of schemas for ISA model version 1.0 can be found in the folder isatools/schemas/isa_model_version_1_0_schemas/core.

The main object is the Investigation, which groups a set of Studies and maintains associated information such as Publications, People involved and the ontologies used for annotating the dataset.

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  1. Installation
  2. ISA model
  3. Creating objects
  4. Converting between ISA formats
  5. Importing and exporting SRA formatted datasets
  6. Downloading files stored in Github
  7. Validating ISA tab and ISA JSON
  8. Known Issues
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