Integrated Packages

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Below you can find the list of currently supported packages (and their versions). If you want to know which tools are integrated from each package, take a look at the integrated protocols page.

Bsoft

• Webpage: http://lsbr.niams.nih.gov/bsoft/

• Supported versions: 1.8.8 (?), 1.9.0 (Feb 2015)

CTFFIND

• Webpage: http://grigoriefflab.janelia.org/ctf

• Supported versions: 3.5 (?), 4.0.15 (Jun 2015), 4.1.5 (Sep 2016)

EMAN

• Webpage: http://blake.bcm.edu/emanwiki/EMAN2

• Supported versions: 2.11 (Jun 2015), 2.12 (Oct 2015)

Frealign

• Webpage: http://grigoriefflab.janelia.org/frealign

• Supported versions: 9.07 (Apr 2014)

Gautomatch*

• Webpage: http://www.mrc-lmb.cam.ac.uk/kzhang/Gautomatch

• Supported versions: 0.53 (Apr 2016)

gCTF*

• Webpage: http://www.mrc-lmb.cam.ac.uk/kzhang/Gctf

• Supported versions: 0.50 (Mar 2016), 1.06 (Nov 2016)

gEMpicker

• Webpage: http://gem.loria.fr/gEMpicker

• Supported versions: 1.1 (Dec 2015)

IMAGIC-4D*

• Webpage: https://imagescience.de

• Supported versions: 110308 (Mar 2011), 160418 (Apr 2016)

Localrec*

• Webpage: https://github.com/OPIC-Oxford/localrec, http://www.opic.ox.ac.uk/wiki/index.php/Localized_reconstruction

• Supported versions: 1.1.0 (Jul 2016)

Magdistortion: estimate and correct*

• Webpage: http://grigoriefflab.janelia.org/magdistortion

• Supported versions: 1.0.1 (Jan 2016)

Motioncorr/dosefgpu

• Webpage: http://cryoem.ucsf.edu/software/driftcorr.html

• Supported versions: 2.1 (Nov 21, 2013)

Motioncor2*

• Webpage: http://msg.ucsf.edu/em/software/motioncor2.html

• Supported versions: 03-16-2016 (Mar 2016), 10-19-2016 (Nov 2016)

Relion

• Webpage: http://www2.mrc-lmb.cam.ac.uk/relion/index.php/Main_Page

• Supported versions: 1.3 (Aug 2014), 1.4, 1.4-float (Sep 2015)

ResMap

• Webpage: http://resmap.sourceforge.net/

• Supported versions: 1.1.5 (Aug 2014)

SIMPLE

• Webpage: http://simplecryoem.com/2.0/index.html

• Supported versions: 2.0 (Aug 2013)

SPIDER

• Webpage: http://spider.wadsworth.org/spider_doc/spider/docs/spider.html

• Supported versions: 21.13 (Dec 2013)

Xmipp

• Webpage: http://xmipp.cnb.csic.es

• Supported versions: 3.2 (Jan-2016)

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Asterisk (*) marks the software available only in devel version of Scipion.