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Labeling medical images using nifti format #504

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Californium23 opened this issue Dec 7, 2020 · 7 comments
Open

Labeling medical images using nifti format #504

Californium23 opened this issue Dec 7, 2020 · 7 comments
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@makseq
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feature Feature request images Image annotation cases often asked

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@Californium23
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How can I import DICOM images for segmentation or other labeling task ? Converting to png may not be a good choice as the transforming threshold needs to be adjusted at any time.
@makseq
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makseq commented Dec 7, 2020

Unfortunately LS doesn't support DICOM yet. But we have DICOM support in our roadmap.

@jrdalenberg
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Could you add nifti to do list as well then for neuroimaging?

@makseq
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makseq commented Dec 9, 2020 •
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Could you explain please what is nifti?

@makseq makseq changed the title To process medical images Labeling medical images using nifti format Feb 15, 2021
@sandorkonya
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Hi there,
just noticed this github repo, and like it much!

I would warmly recommend using cornerstone for the DICOM integration and the cornerstone tools for the GUI!

@niklub niklub added the feature Feature request label Mar 29, 2021
@smoreface smoreface added the images Image annotation cases label Sep 13, 2021
@fcossio
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fcossio commented Oct 1, 2021

Hi, is anyone currently working on this? I would like to give it a shot.

@makseq
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makseq commented Oct 1, 2021

@fcossio Hi, nobody works on it. If you could make a PR, it would be amazing 🙂

@makseq makseq mentioned this issue Oct 25, 2021
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@doantientai
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Any news?
My temporal solution is to convert all the layers to video frames.

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@makseq @niklub @sandorkonya @smoreface @doantientai @jrdalenberg @fcossio @Californium23