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Pull in tests for CWL chaining that show how it doesn't happen as much as we would like

cwl

enhancement

intern

testing

Status: Open.

#5291 In DataBiosphere/toil;

· adamnovak opened on Apr 25, 2025

Re-enable <code>cwltool</code>'s tmpdir cleanup feature

bug

cwl

Status: Open.

#5226 In DataBiosphere/toil;

· adamnovak opened on Mar 6, 2025

Speed up CWL conformance tests to ~10 minutes total using the pytest plugin

cwl

Status: Open.

#5182 In DataBiosphere/toil;

· unito-bot opened on Dec 9, 2024

Support multi-arch Singularity

cwl

Status: Open.

#5181 In DataBiosphere/toil;

· unito-bot opened on Dec 9, 2024

Support mixed-arch HPC where leader and jobs need different Python interpreters

cwl

Status: Open.

#5180 In DataBiosphere/toil;

· unito-bot opened on Dec 9, 2024

Implement CWL loop extension

cwl

roadmap

Status: Open.

#5169 In DataBiosphere/toil;

· adamnovak opened on Nov 26, 2024

Chaining is hard to track

cwl

wdl

Status: Open.

#4735 In DataBiosphere/toil;

· adamnovak opened on Jan 4, 2024

Steal cwltool's help

cwl

documentation

Status: Open.

#4705 In DataBiosphere/toil;

· unito-bot opened on Dec 1, 2023

toil-cwl-runner doesn't catch strings passed where files are expected

bug

cwl

intern

Status: Open.

#4603 In DataBiosphere/toil;

· unito-bot opened on Sep 21, 2023

Can't pickle cwltool:ProcessGenerator

bug

cwl

Status: Open.

#4404 In DataBiosphere/toil;

· jfennick opened on Mar 8, 2023

CWL Conditional steps that aren't running still get scheduled to a job scheduler.

cwl

intern

Status: Open.

#3990 In DataBiosphere/toil;

· kannon92 opened on Jan 7, 2022

cwl streaming: also support nested types

cwl

intern

Status: Open.

#3801 In DataBiosphere/toil;

· mr-c opened on Sep 22, 2021