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.idea
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analysis
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- action_trains
- sample_docs
- transmart
- wrappers
- 100k_hpo.json
- Gazetteer for autoimmune disorders.docx
- HPO_Phenome_Model_sample.png
- PatientViews.png
- Surgical_Procedures.json
- SystemArch.png
- all_A00-N99_concepts_labels.json
- all_insts.csv
- all_insts.json
- auto_immune_gazetteer.txt
- autoimmune-concepts.json
- cardio_concepts.txt
- cardiovascular_concepts.json
- crishandler-0.1.jar
- curated_mappings.json
- exact_concpts_mappings.json
- hwdbutil-1.2.jar
- kconnect_annotation.sql
- mimir_queries.json
- not_mapped_disorders.json
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__init__.py
ann_converter.py
ann_post_rules.py
ann_validation.py
autoimmune.py
cohort_helper.py
cohortanalysis.py
concept_mapping.py
concept_processing_100k.py
doc_set_analyzer.py
docanalysis.py
entity_centric_es.py
environment.yml
gb_utils.py
gel_util.py
mimic_indexer.py
mimicdao.py
ontotextapi.py
prospector.py
pubmed_data.py
semehr_processor.py
sqldbutils.py
study_analyzer.py
utils.py

resources

Honghan

sample medical records

Dec 19, 2018

1edf27d · Dec 19, 2018

History

Name	Name	Last commit message	Last commit date
parent directory ..
action_trains	action_trains	cris hep c actionable transparency model	Jan 31, 2018
sample_docs	sample_docs	sample medical records	Dec 19, 2018
transmart	transmart	SemEHR tree nodes for Glowing Bear UI	Aug 10, 2017
wrappers	wrappers	mimic doc types	Jul 12, 2017
100k_hpo.json	100k_hpo.json	mimic doc types	Jul 12, 2017
Gazetteer for autoimmune disorders.docx	Gazetteer for autoimmune disorders.docx	disorders / concepts resources	Dec 2, 2016
HPO_Phenome_Model_sample.png	HPO_Phenome_Model_sample.png	Add files via upload	Feb 10, 2018
PatientViews.png	PatientViews.png	figs uploaded	Sep 16, 2017
Surgical_Procedures.json	Surgical_Procedures.json	updated	Dec 13, 2016
SystemArch.png	SystemArch.png	figs uploaded	Sep 16, 2017
all_A00-N99_concepts_labels.json	all_A00-N99_concepts_labels.json	A00-N99 ICD10 concept labels	Jun 8, 2018
all_insts.csv	all_insts.csv	new mappings added	Dec 8, 2016
all_insts.json	all_insts.json	disorders / concepts resources	Dec 2, 2016
auto_immune_gazetteer.txt	auto_immune_gazetteer.txt	disorders / concepts resources	Dec 2, 2016
autoimmune-concepts.json	autoimmune-concepts.json	scripts for generating sparql/mimir queries using concept names	Oct 14, 2016
cardio_concepts.txt	cardio_concepts.txt	add concept level freqs	May 10, 2018
cardiovascular_concepts.json	cardiovascular_concepts.json	support general cohort analytics	Dec 13, 2016
crishandler-0.1.jar	crishandler-0.1.jar	input/output handlers for GCP	Jul 3, 2018
curated_mappings.json	curated_mappings.json	new mappings added	Dec 8, 2016
exact_concpts_mappings.json	exact_concpts_mappings.json	new mappings added	Dec 8, 2016
hwdbutil-1.2.jar	hwdbutil-1.2.jar	Add files via upload	Jul 3, 2018
kconnect_annotation.sql	kconnect_annotation.sql	Create kconnect_annotation.sql	Jan 5, 2018
mimir_queries.json	mimir_queries.json	concept to mimir query dictionary	Oct 14, 2016
not_mapped_disorders.json	not_mapped_disorders.json	Update not_mapped_disorders.json	Dec 9, 2016

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